View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20019_low_16 (Length: 384)
Name: NF20019_low_16
Description: NF20019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20019_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 7305995 - 7305648
Alignment:
| Q |
1 |
taagtgttatttggacttattcatttcagggacttgggttggatcgagacacggggtttttgctttacgggcctccaggatgtggtaaaacactgattgc |
100 |
Q |
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| T |
7305995 |
taagtgttatttgtacttattcatttcagggacttgggttggatcgagacacggggtttttgctttacgggcctccaggatgtggtaaaacactgattgc |
7305896 |
T |
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| Q |
101 |
caaagctgttgccaatgaagccggagctaatttcatttatattaaggtctgtctatatattccatccatttctcattagtctggtttgtagaatgttgct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7305895 |
caaagctgttgccaatgaagccggagctaatttcatttatattaaggtctgtctatatattccatccatttctcattagtctggtttgtagaatgttgct |
7305796 |
T |
|
| Q |
201 |
ttgtctcaaatgatgaattagttttgaatattttaattgcttttgttgggtttttagggtcctgagcttctaaataaatatgttggagaaagcgagcgtg |
300 |
Q |
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| T |
7305795 |
ttgtctcaaatgatgaattagttttgaatattttaattgcttttgttgggtttttagggtcctgagcttctaaataaatatgttggagaaagcgagcgtg |
7305696 |
T |
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| Q |
301 |
aagtccggaaactatttgatcgtgcaagggcatgtgcaccttgtatac |
348 |
Q |
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| T |
7305695 |
aagtccggaaattatttgatcgtgcaagggcatgtgcaccttgtatac |
7305648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 11 - 348
Target Start/End: Complemental strand, 7296670 - 7296331
Alignment:
| Q |
11 |
ttggacttattcatttcagggacttgggttggatcgagacacggggtttttgctttacgggcctccaggatgtggtaaaacactgattgccaaagctgtt |
110 |
Q |
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| T |
7296670 |
ttggactaatttatttcagggacttgggttggatcgagacacggggtttttgctttacgggcctccaggatgtggtaaaacactgattggcaaagctgtt |
7296571 |
T |
|
| Q |
111 |
gccaatgaagccggagctaatttcatttatattaaggtctgtctatatattccatccatttctc---attagtctggtttgtagaatgttgctttgtctc |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||| ||| || ||||| ||||| ||||||| |
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| T |
7296570 |
gccaatgaagccggagctaatttcatttatattaaggtctgtctaaatattccatccatttctcaataatagtttgg-ttatagaacgttgcgttgtctc |
7296472 |
T |
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| Q |
208 |
aaatgatgaattagttttgaatattttaattgcttttgttgggtttttagggtcctgagcttctaaataaatatgttggagaaagcgagcgtgaagtccg |
307 |
Q |
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| T |
7296471 |
agatgatgaattaattttgaataatttagttgatttttttggtcttttagggtcctgagcttctaaataaatatgttggagaaagcgattgtggagtccg |
7296372 |
T |
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| Q |
308 |
gaaactatttgatcgtgcaagggcatgtgcaccttgtatac |
348 |
Q |
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| T |
7296371 |
gaaattatttgatcgtgcaagggcatgtgcaccatgtatac |
7296331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 52 - 176
Target Start/End: Original strand, 789763 - 789887
Alignment:
| Q |
52 |
cggggtttttgctttacgggcctccaggatgtggtaaaacactgattgccaaagctgttgccaatgaagccggagctaatttcatttatattaaggtctg |
151 |
Q |
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|||| |||||||||| ||| |||||||| |||||||||||| |||||||||| |||||||||||||| || ||||||||||||||| ||||||||||||| |
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| T |
789763 |
cgggatttttgcttttcggacctccaggttgtggtaaaacattgattgccaaggctgttgccaatgaggcaggagctaatttcattcatattaaggtctg |
789862 |
T |
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| Q |
152 |
tctatatattccatccatttctcat |
176 |
Q |
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|||| ||||||||||| ||| |||| |
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| T |
789863 |
tctaaatattccatccttttatcat |
789887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 340
Target Start/End: Original strand, 789969 - 790055
Alignment:
| Q |
254 |
ttagggtcctgagcttctaaataaatatgttggagaaagcgagcgtgaagtccggaaactatttgatcgtgcaagggcatgtgcacc |
340 |
Q |
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|||||| || ||||||||||||||||||||||| |||||||||| || ||| |||| | | ||| |||| |||||| | |||||||| |
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| T |
789969 |
ttagggacccgagcttctaaataaatatgttggggaaagcgagcttgcagtgcggacattgtttaatcgggcaaggacttgtgcacc |
790055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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