View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20019_low_18 (Length: 343)
Name: NF20019_low_18
Description: NF20019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20019_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 14654847 - 14654514
Alignment:
| Q |
1 |
ggtgaaattttgagtcaaacaatcatcactgtgaagattttgagatcaatggttagagtgcgggagaaataagtattaattgttcctccttctttcatat |
100 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
14654847 |
ggtgaaattatgagtcaaacaatcatcactgtgaagattttgagatcaatggttagagtgcgggagaaataagtattaactgttcctccttctttcatat |
14654748 |
T |
|
| Q |
101 |
gaagaatctcaaaatccctccgtaaagcttgtagttgtgcccttatgactcagtttgaacccttaaattttttcttcacaaatacatcttcattaagttc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
14654747 |
gaagaatctcaaaatccctccgtaaagcttgtagttgtgcccttttgactcagtttgaacccttaaattttttcttcacaaatacatattcattaagttc |
14654648 |
T |
|
| Q |
201 |
accatgaagaaatgcactcttcacatccaactgaaaaacatcccaactgtgttgagcagccagagcaagtattaatctaatggtatctg----tgccatt |
296 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
14654647 |
accatgaagaaatgcactcttcacatccaactgaaaaacatcccaactgtgttgagcagccagagcaagtattaatctaatggtatctggtcttgccatt |
14654548 |
T |
|
| Q |
297 |
ggagcaaataattcaatgtcgtcaactccatatt |
330 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
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| T |
14654547 |
ggagcaaatacttcaatgtcgtcaactccatatt |
14654514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 47 - 163
Target Start/End: Original strand, 20048721 - 20048837
Alignment:
| Q |
47 |
caatggttagagtgcgggagaaataagtattaattgttcctccttctttcatatgaagaatctcaaaatccctccgtaaagcttgtagttgtgcccttat |
146 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20048721 |
caatggttagagtgcgggagaaataagtattaattgtttctccttctttcatatgaagaatctcaaaatccctccgtaaagcttgtagttgtgcccttat |
20048820 |
T |
|
| Q |
147 |
gactcagtttgaaccct |
163 |
Q |
| |
|
||||| ||||||||||| |
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|
| T |
20048821 |
gactcggtttgaaccct |
20048837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 47 - 178
Target Start/End: Original strand, 14654868 - 14654999
Alignment:
| Q |
47 |
caatggttagagtgcgggagaaataagtattaattgttcctccttctttcatatgaagaatctcaaaatccctccgtaaagcttgtagttgtgcccttat |
146 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |
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|
| T |
14654868 |
caatggttagagtgtgggagaaataagcattaactgtgtctccttctttcatatgaagaatctcaaaatccctctataaagcttgtagttgtgccctttt |
14654967 |
T |
|
| Q |
147 |
gactcagtttgaacccttaaattttttcttca |
178 |
Q |
| |
|
||||| ||||||||||| ||||||| ||||| |
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|
| T |
14654968 |
gactcggtttgaaccctgcaatttttgcttca |
14654999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 20048699 - 20048648
Alignment:
| Q |
2 |
gtgaaattttgagtcaaacaatcatcactgtgaagattttgagatcaatggt |
53 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
20048699 |
gtgaaattatgagtcaaacaatcatcactgagaagattttgagatcaatggt |
20048648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 174 - 330
Target Start/End: Complemental strand, 5877020 - 5876860
Alignment:
| Q |
174 |
cttcacaaatacatcttcattaagttcaccatgaagaaatgcactcttcacatccaactgaaaaacatcccaactgtgttgagcagccagagcaagtatt |
273 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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|
| T |
5877020 |
cttcacaaatacctcttcattaagttcaccatgaagaaatgcactcttcacatccaactgaaaaacatcccaactgtgttgagcagctaaagcaagtatt |
5876921 |
T |
|
| Q |
274 |
aatctaatggtatct----gtgccattggagcaaataattcaatgtcgtcaactccatatt |
330 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||| |||| ||| |||||||||||||| |
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| T |
5876920 |
aatctaatggtatctagtcttgccactggagcaaatacttcagtgtagtcaactccatatt |
5876860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 49 - 178
Target Start/End: Complemental strand, 11847939 - 11847810
Alignment:
| Q |
49 |
atggttagagtgcgggagaaataagtattaattgttcctccttctttcatatgaagaatctcaaaatccctccgtaaagcttgtagttgtgcccttatga |
148 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
11847939 |
atggttagagtgcgggagaaataagcattaactgtttctccttctttcatatgaagaatctcaaaatccctccgtaaagcttgtagttgtgcccttttca |
11847840 |
T |
|
| Q |
149 |
ctcagtttgaacccttaaattttttcttca |
178 |
Q |
| |
|
||| ||||||||||| |||||||| ||||| |
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|
| T |
11847839 |
ctcggtttgaaccctgaaatttttgcttca |
11847810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 174 - 262
Target Start/End: Complemental strand, 11850324 - 11850236
Alignment:
| Q |
174 |
cttcacaaatacatcttcattaagttcaccatgaagaaatgcactcttcacatccaactgaaaaacatcccaactgtgttgagcagcca |
262 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11850324 |
cttcacaaatacctcttcattaagttcaccgtgaagaaatgcactcttcacatccaactgaaaaacatcccaactgtgttgagcagcca |
11850236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 11847962 - 11848014
Alignment:
| Q |
1 |
ggtgaaattttgagtcaaacaatcatcactgtgaagattttgagatcaatggt |
53 |
Q |
| |
|
||||||| | ||||||||||||| ||||||| ||||||||| ||||||||||| |
|
|
| T |
11847962 |
ggtgaaactatgagtcaaacaattatcactgagaagattttaagatcaatggt |
11848014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 49 - 178
Target Start/End: Complemental strand, 15592805 - 15592676
Alignment:
| Q |
49 |
atggttagagtgcgggagaaataagtattaattgttcctccttctttcatatgaagaatctcaaaatccctccgtaaagcttgtagttgtgcccttatga |
148 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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|
| T |
15592805 |
atggttagagtgcgggagaaataagcattaactgtttctccttctttcatatgaagaatctcaaaatccctccgtaaagcttgtagttgtgcccttttca |
15592706 |
T |
|
| Q |
149 |
ctcagtttgaacccttaaattttttcttca |
178 |
Q |
| |
|
||| ||||||||||| |||||||| ||||| |
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|
| T |
15592705 |
ctcggtttgaaccctgaaatttttgcttca |
15592676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 15592828 - 15592880
Alignment:
| Q |
1 |
ggtgaaattttgagtcaaacaatcatcactgtgaagattttgagatcaatggt |
53 |
Q |
| |
|
||||||| | ||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
15592828 |
ggtgaaactatgagtcaaacaatcatcactgagaagattttaagatcaatggt |
15592880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 47 - 161
Target Start/End: Complemental strand, 26545563 - 26545449
Alignment:
| Q |
47 |
caatggttagagtgcgggagaaataagtattaattgttcctccttctttcatatgaagaatctcaaaatccctccgtaaagcttgtagttgtgcccttat |
146 |
Q |
| |
|
||||||||| ||| || |||||||| | ||| | |||| |||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||| | |
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|
| T |
26545563 |
caatggttaaagtacgagagaaatatgcattcactgtttctccttctttcatatgaagaatctcaaaatcccttcgtaaagcttgcaactgtgccctttt |
26545464 |
T |
|
| Q |
147 |
gactcagtttgaacc |
161 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
26545463 |
gactcgatttgaacc |
26545449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 177 - 272
Target Start/End: Complemental strand, 26554921 - 26554826
Alignment:
| Q |
177 |
cacaaatacatcttcattaagttcaccatgaagaaatgcactcttcacatccaactgaaaaacatcccaactgtgttgagcagccagagcaagtat |
272 |
Q |
| |
|
||||||||| |||||| | || ||||||||||| ||||||||||| ||||| | |||||||||| |||||||| |||||| |||| ||||||||| |
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|
| T |
26554921 |
cacaaatacttcttcacttagatcaccatgaaggaatgcactctttacatcaagctgaaaaacactccaactgttttgagctgccaaagcaagtat |
26554826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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