View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20019_low_19 (Length: 297)
Name: NF20019_low_19
Description: NF20019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20019_low_19 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 297
Target Start/End: Complemental strand, 8924513 - 8924233
Alignment:
| Q |
17 |
acaagtcgaattctcaaggtggctatgtttatgccattgccggggatttgaaggttggaaactataatcatgatgactgtcacgtggagcttgttacact |
116 |
Q |
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| T |
8924513 |
acaagtcgaattctcaacgtggccatgtttatgccattgccggggatttgaaggttagaaactataaaaatgatgactgtcacgtgggggttgttacgcc |
8924414 |
T |
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| Q |
117 |
gatatcttttttccgttataattacagctctgaggattggcatactcctgatggaaagttttcatacgaggacgaaagtttcccatatgaatggaaggtt |
216 |
Q |
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| T |
8924413 |
aatatcttttttctgttataattacagctctgaggattggcatactcccgatggaaagttttcgtacgaggacagtagtttcccatatgaatggaaggtt |
8924314 |
T |
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| Q |
217 |
acgaatcaaatgtttgattacagtgaaattcataggatgttggtgagtggttttgaagtttcttggatgagtggtccttgt |
297 |
Q |
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| T |
8924313 |
ccgaatcaaatgtttgattacagtgaaattcataggatgttggtgagtggttttgaagtttcttggatgagtggtccttgt |
8924233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 17 - 297
Target Start/End: Complemental strand, 8936136 - 8935844
Alignment:
| Q |
17 |
acaagtcgaattctcaaggtggctatgtttatgccattgccggggatttgaaggttggaaactataatcatgatgactgtcacgtggagcttgttacact |
116 |
Q |
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| T |
8936136 |
acaagtcgaattctcaaggtggccatgtttatgctattgccggggatttgaaggttagagactataaagatgatgactgtcacgtggaggttgttacgcc |
8936037 |
T |
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| Q |
117 |
gatatcttttttccgttataattacagctctgaggattggcatactcctgatggaaagttttcatacgaggacgaaagtttccc------------atat |
204 |
Q |
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| T |
8936036 |
gatatcctttttccgttataattatagctctaaggagtggaatactcccgatggaaagttttcgtacatggacaaaagttacccaagttattataaaaat |
8935937 |
T |
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| Q |
205 |
gaatggaaggttacgaatcaaatgtttgattacagtgaaattcataggatgttggtgagtggttttgaagtttcttggatgagtggtccttgt |
297 |
Q |
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| T |
8935936 |
aaatggaaggttccgaatcaaatgtttgattacagtgaaattcataggatgttggtgagtggttttgaagtttcttggatgactggtgcttgt |
8935844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 17 - 297
Target Start/End: Complemental strand, 8959675 - 8959398
Alignment:
| Q |
17 |
acaagtcgaattctcaaggtggctatgtttatgccattgccggggatttgaaggttggaaactataatcatgatgactgtcacgtggagcttgttacact |
116 |
Q |
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| T |
8959675 |
acaagtcgaattctcaacgtggccatgtttatgccattgccggggatttgaaggttagaaactataaaaatgatgactgtcacgtgggggttgttacgcc |
8959576 |
T |
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| Q |
117 |
gatatcttttttccgttataattacagctctgaggattggcatactcctgatggaaagttttcatacgaggacgaaagtttcccatatgaatggaaggtt |
216 |
Q |
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| T |
8959575 |
aatatcttttttccgttataattacagctctgaggagtggaatactcccgatggaaagttttcgtacagtgacgcggattatagaaatgaacgga---tt |
8959479 |
T |
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| Q |
217 |
acgaatcaaatgtttgattacagtgaaattcataggatgttggtgagtggttttgaagtttcttggatgagtggtccttgt |
297 |
Q |
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| T |
8959478 |
ccgaatcaaatgtttgattacagtgaaattcatagcatgttggtgggtggatttgaagtttcttggatgagtggtccttgt |
8959398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 8945683 - 8945623
Alignment:
| Q |
18 |
caagtcgaattctcaaggtggctatgtttatgccattgccggggatttgaaggttggaaac |
78 |
Q |
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| T |
8945683 |
caagtccaattcccaaggtggccatgtttataccattgctggagatttgaaggttgaaaac |
8945623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 297
Target Start/End: Complemental strand, 8945518 - 8945461
Alignment:
| Q |
240 |
tgaaattcataggatgttggtgagtggttttgaagtttcttggatgagtggtccttgt |
297 |
Q |
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| T |
8945518 |
tgaaattcatacgatgttgttgggtggatttgaggttgcatggatgagtggtccttgt |
8945461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 297
Target Start/End: Complemental strand, 8947420 - 8947391
Alignment:
| Q |
268 |
tttgaagtttcttggatgagtggtccttgt |
297 |
Q |
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| T |
8947420 |
tttgaagtttcttggatgagtggtccttgt |
8947391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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