View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20019_low_2 (Length: 660)

Name: NF20019_low_2
Description: NF20019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20019_low_2
NF20019_low_2
[»] chr1 (1 HSPs)
chr1 (16-652)||(37054991-37055627)


Alignment Details
Target: chr1 (Bit Score: 562; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 16 - 652
Target Start/End: Original strand, 37054991 - 37055627
Alignment:
Q  16 gttggagctggagctggagcttcaacttcagcttcaatgttttgtgatggagaaggtgatggtgtgagaaactgatcagaatcagaatcagaatcaccat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37054991 gttggagctggagctggagcttcaacttcagcttcaatgttttgtgatggagaaggtgatggtgtgagaaactgatcagaatcagaatcagaatcaccat 37055090  T
Q  116 tggatttagaaggtacccttttgtggaaactctttaaaccaagtaaagatctaaacttttcaactataaaaccttgtttctcttcattctcatctaaacc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37055091 tggatttagaaggtacccttttgtggaaactctttaaaccaagtaaagatctaaacttttcaactataaaaccttgtttctcttcattctcatctaaacc 37055190  T
Q  216 tgagattttctgaacctgcttcttttcattttcttgttctttcatgtaatagttatcttgtaaagtatgaacatggaagcttccagctgcattgattaaa 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37055191 tgagattttctgaacctgcttcttttcattttcttgttctttcatgtaatagttatcttgtaaagtatgaacatggaagcttccagctgcattgattaaa 37055290  T
Q  316 gcaccaacactcaaaatgtgagtcctttgtgatgatgataaaggaaccaagagtgtgataatgatgatgaagatcatggtaagaagctcagaaccacaac 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37055291 gcaccaacactcaaaatgtgagtcctttgtgatgatgataaaggaaccaagagtgtgataatgatgatgaagatcatggtaagaagctcagaaccacaac 37055390  T
Q  416 tcattttctttttctttcttccaactaaaagttaatgcagctttcctcttataaaagcttgtttccnnnnnnnnnnnnncatcnnnnnnnntgaatattt 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||         |||||||||    
T  37055391 tcattttctttttctttcttccaactaaaagttaatgcagctttcctcttataaaagcttgtttcctttttgtttttttcataaaaaaaaatgaatattt 37055490  T
Q  516 tttcatttggttagtgctggtgaatgaaaataagatctgaaacagtactgtctttaatgctactccaagcaaagcagggaacccctgaacctttggcagt 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37055491 tttcatttggttagtgctggtgaatgaaaataagatctgaaacagtactgtctttaatgctactccaagcaaagcagggaacccctgaacctttggcagt 37055590  T
Q  616 tgtagttgtaccaggccttctttacttctctgctcct 652  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  37055591 tgtagttgtaccaggccttctttacttccctgttcct 37055627  T

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