View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20019_low_20 (Length: 280)
Name: NF20019_low_20
Description: NF20019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20019_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 15 - 265
Target Start/End: Complemental strand, 11636800 - 11636550
Alignment:
| Q |
15 |
gggacaacatctggattgcaagaaaaaggtgatcctctctccaatgtgtattgaccctcaatttcctcataatgaacaaagttttccctgaaattcggaa |
114 |
Q |
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| T |
11636800 |
gggacaacatccggattgcaagaaaaagatgatccgctctccaatgtgtattgaccctcgatttcctcataatgaacacagttttccttgaaattcggaa |
11636701 |
T |
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| Q |
115 |
aatctctgtaactaggaagctttagacatatggcggaagactgcccaatacaactgcaaggagtgaaatctatcgcacggatccattgcttatcagggga |
214 |
Q |
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| T |
11636700 |
aatctctgttactagaaagctctagacatatagcggaagactgcccaatacagttgcaaggagtgaaatctatcgcacggatccattggtcatcagggga |
11636601 |
T |
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| Q |
215 |
atctctgtaatagttcttcagaggatctttatatacacttgttgatgtagg |
265 |
Q |
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| T |
11636600 |
atctctgtaatagttcttcaaaggatctttatatacacttgttgatgtagg |
11636550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 12 - 243
Target Start/End: Original strand, 11685743 - 11685974
Alignment:
| Q |
12 |
atagggacaacatctggattgcaagaaaaaggtgatcctctctccaatgtgtattgaccctcaatttcctcataatgaacaaagttttccctgaaattcg |
111 |
Q |
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| T |
11685743 |
atagggacaacatccagattgcgagaaaaaggtaaccctctctccaaagtgtaattcccctcaatttcctcataatgagcaaagttttccctgaaattcg |
11685842 |
T |
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| Q |
112 |
gaaaatctctgtaactaggaagctttagacatatggcggaagactgcccaatacaactgcaaggagtgaaatctatcgcacggatccattgcttatcagg |
211 |
Q |
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| T |
11685843 |
gaaaatctctgttactaggaagctctatacataatgccgaagagtgcccaatacaactgaaaggtgtgaaatctatggaacgggtccattgctcatcagg |
11685942 |
T |
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| Q |
212 |
ggaatctctgtaatagttcttcagaggatctt |
243 |
Q |
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| T |
11685943 |
ggaatctttataataattcttcgcaggatctt |
11685974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 12 - 243
Target Start/End: Original strand, 11689755 - 11689986
Alignment:
| Q |
12 |
atagggacaacatctggattgcaagaaaaaggtgatcctctctccaatgtgtattgaccctcaatttcctcataatgaacaaagttttccctgaaattcg |
111 |
Q |
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|||||||||||||| |||||| |||||||||| | ||||||||||| ||||| | ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
11689755 |
atagggacaacatccagattgcgagaaaaaggtaaccctctctccaaagtgtaattcccctcaatttcctcataatgagcaaagttttccctgaaattcg |
11689854 |
T |
|
| Q |
112 |
gaaaatctctgtaactaggaagctttagacatatggcggaagactgcccaatacaactgcaaggagtgaaatctatcgcacggatccattgcttatcagg |
211 |
Q |
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| T |
11689855 |
gaaaatctctgttactaggaagctctatacataatgccgaagagtgcccaatacaactgaaaggtgtgaaatctatggaacgggtccattgctcatcagg |
11689954 |
T |
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| Q |
212 |
ggaatctctgtaatagttcttcagaggatctt |
243 |
Q |
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| T |
11689955 |
ggaatctttataataattcttcgcaggatctt |
11689986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 15 - 232
Target Start/End: Complemental strand, 11628040 - 11627823
Alignment:
| Q |
15 |
gggacaacatctggattgcaagaaaaaggtgatcctctctccaatgtgtattgaccctcaatttcctcataatgaacaaagttttccctgaaattcggaa |
114 |
Q |
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||||||||||| |||||||||||||||||||||| |||||||| ||||| ||||| || ||||||| || ||| |||||||||||||||||||||||| |
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| T |
11628040 |
gggacaacatccagattgcaagaaaaaggtgatccgctctccaacatgtatggacccgcactttcctcgtactgagcaaagttttccctgaaattcggaa |
11627941 |
T |
|
| Q |
115 |
aatctctgtaactaggaagctttagacatatggcggaagactgcccaatacaactgcaaggagtgaaatctatcgcacggatccattgcttatcagggga |
214 |
Q |
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| T |
11627940 |
aatctctgttgctaggaagctctagacataaagcagaagactgcccaatacaactgcatggagtgaaatctactgcacggatccattggtcatcaggggg |
11627841 |
T |
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| Q |
215 |
atctctgtaatagttctt |
232 |
Q |
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||| || |||||||||| |
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| T |
11627840 |
atcgctaaaatagttctt |
11627823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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