View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20019_low_21 (Length: 275)
Name: NF20019_low_21
Description: NF20019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20019_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 12 - 260
Target Start/End: Original strand, 14655204 - 14655452
Alignment:
| Q |
12 |
cgaagaatattttccaccaacattgcccaataatcataacgaccatcaaactttggaataatataatgtacgaaattacgactatcattttccgccattc |
111 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14655204 |
cgaagaaaattttccaccaacattgcccaataatcataacgaccatcaaacttgggaataatataatgtacgaaattacgactatcattttccgccattc |
14655303 |
T |
|
| Q |
112 |
ttctaaacnnnnnnnacttgaaagaaaatttcaatttatttcttgatacacacttatttctctcaccccagttgtttccctcacgctcagtcactatgga |
211 |
Q |
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|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||| |
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| T |
14655304 |
ttctaaacttcttttacttgaaagaaaatttcaatttctttcttgatacacacttatttctctcaccccagatgttttcctcacgctcagtcactgtgga |
14655403 |
T |
|
| Q |
212 |
tcaagccccaataatggagctttgataccaattgttaatactaataact |
260 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14655404 |
tcaagccccaataatggagctttgataccaattgttaatactaataact |
14655452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 119
Target Start/End: Original strand, 20049056 - 20049163
Alignment:
| Q |
12 |
cgaagaatattttccaccaacattgcccaataatcataacgaccatcaaactttggaataatataatgtacgaaattacgactatcattttccgccattc |
111 |
Q |
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||||||| |||||||| ||||||||||||| ||||||| ||||||||||||| ||||||||| ||||||| ||||||| |||||||||||||||||||| |
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| T |
20049056 |
cgaagaaaattttccataaacattgcccaatgatcataatgaccatcaaacttgggaataatagaatgtacaaaattactactatcattttccgccattc |
20049155 |
T |
|
| Q |
112 |
ttctaaac |
119 |
Q |
| |
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||| |||| |
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| T |
20049156 |
ttccaaac |
20049163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 153 - 260
Target Start/End: Original strand, 20049166 - 20049273
Alignment:
| Q |
153 |
cttgatacacacttatttctctcaccccagttgtttccctcacgctcagtcactatggatcaagccccaataatggagctttgataccaattgttaatac |
252 |
Q |
| |
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|||| |||||||||||||||||||||||| ||||||||||||| |||| ||| ||||||| | ||||||||||||||| ||||||||||||||||||| |
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| T |
20049166 |
cttgttacacacttatttctctcaccccaattgtttccctcacactcactcatggtggatcaggtcccaataatggagctctgataccaattgttaatac |
20049265 |
T |
|
| Q |
253 |
taataact |
260 |
Q |
| |
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||||||| |
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| T |
20049266 |
caataact |
20049273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 12 - 249
Target Start/End: Complemental strand, 15592472 - 15592230
Alignment:
| Q |
12 |
cgaagaatattttccaccaacattgcccaataatcataacgaccatcaaactttggaataatataatgtacgaaattacgactatcattttccgccattc |
111 |
Q |
| |
|
||||||| |||||||| |||||||||||||| ||||||| ||||||||||||| ||||||||| ||||||||||||||| |||||||||||| ||||||| |
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| T |
15592472 |
cgaagaaaattttccatcaacattgcccaatgatcataatgaccatcaaacttgggaataatagaatgtacgaaattactactatcattttctgccattc |
15592373 |
T |
|
| Q |
112 |
ttctaaacnnnnnnnacttgaaagaaaatttcaatttatttcttgatacacacttatttctctcaccccagttgttt-ccctca----cgctcagtcact |
206 |
Q |
| |
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|||||||| |||||||||||||| |||||| ||||||||||||||||||||| ||||||||| |||||| |||||| | |||| ||||| |
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| T |
15592372 |
ttctaaactcctttttcttgaaagaaaattgcaatttctttcttgatacacacttattttcctcaccccaattgtttcccctcacactcactcactcact |
15592273 |
T |
|
| Q |
207 |
atggatcaagccccaataatggagctttgataccaattgttaa |
249 |
Q |
| |
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||||||| ||||||||||||||||| || ||||||||||||| |
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| T |
15592272 |
gtggatcaggccccaataatggagctctggtaccaattgttaa |
15592230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 12 - 249
Target Start/End: Complemental strand, 11847606 - 11847360
Alignment:
| Q |
12 |
cgaagaatattttccaccaacattgcccaataatcataacgaccatcaaactttggaataatataatgtacgaaattacgactatcattttccgccattc |
111 |
Q |
| |
|
||||||| |||||||| |||||||||||||| || |||| ||||||||||||| ||| ||||| ||||||||||||||| |||||||||||||| ||||| |
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| T |
11847606 |
cgaagaaaattttccatcaacattgcccaatgatgataatgaccatcaaacttgggagtaatagaatgtacgaaattactactatcattttccgtcattc |
11847507 |
T |
|
| Q |
112 |
ttctaaacnnnnnnnacttgaaagaaaatttcaatttatttcttgatacacacttatttctctcaccccagttgttt-ccctca--------cgctcagt |
202 |
Q |
| |
|
|||||||| |||||||||||||| |||||| ||||||||||||||||||||| |||||| || |||||| |||||| | |||| | |
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| T |
11847506 |
ttctaaactcctttttcttgaaagaaaattgcaatttctttcttgatacacacttattttcctcacctcaattgtttcccctcacactcactcactcact |
11847407 |
T |
|
| Q |
203 |
cactatggatcaagccccaataatggagctttgataccaattgttaa |
249 |
Q |
| |
|
|||| ||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
11847406 |
cactgtggatcatgccccaataatggagctctgataccaattgttaa |
11847360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 12 - 249
Target Start/End: Complemental strand, 5875326 - 5875081
Alignment:
| Q |
12 |
cgaagaatattttccaccaacattgcccaataatcataacgaccatcaaactttggaataatataatgtacgaaattacgactatcattttccgccattc |
111 |
Q |
| |
|
||||||| |||||||| ||||||| ||||| ||||||| ||||||||||||| ||||||||| ||||||||||||||| ||||||||||||| |||||| |
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| T |
5875326 |
cgaagaaaattttccatcaacattttccaatgatcataatgaccatcaaacttgggaataatagaatgtacgaaattactactatcattttcccccattc |
5875227 |
T |
|
| Q |
112 |
ttctaaacnnnnnnnacttgaaagaaaatttcaatttatttcttgatacacacttatttctctcaccccagttgttt-ccctca--------cgctcagt |
202 |
Q |
| |
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|| ||||| |||||||||||||| |||||| ||||||||||||||||||||| ||||||||| | |||| |||||| | |||| | |
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| T |
5875226 |
tt-taaactcctttttcttgaaagaaaattgcaatttctttcttgatacacacttattttcctcaccccaatcgtttcccctcacactcactcactcact |
5875128 |
T |
|
| Q |
203 |
cactatggatcaagccccaataatggagctttgataccaattgttaa |
249 |
Q |
| |
|
|||| ||||||| |||||||||||||| || |||||||||||||||| |
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| T |
5875127 |
cactgtggatcaggccccaataatggatctctgataccaattgttaa |
5875081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 246
Target Start/End: Complemental strand, 26545056 - 26545012
Alignment:
| Q |
202 |
tcactatggatcaagccccaataatggagctttgataccaattgt |
246 |
Q |
| |
|
||||| ||||||| ||||||||||||||||| ||||||||||||| |
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| T |
26545056 |
tcactgtggatcaggccccaataatggagctctgataccaattgt |
26545012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 186
Target Start/End: Original strand, 2774054 - 2774086
Alignment:
| Q |
154 |
ttgatacacacttatttctctcaccccagttgt |
186 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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|
| T |
2774054 |
ttgatacacacttatttctctcaccccagttgt |
2774086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 260
Target Start/End: Complemental strand, 2774039 - 2773931
Alignment:
| Q |
150 |
tttcttgatacacacttatttctctcaccccagttgtttccctcacgctcagtcactatggatcaagccccaataatggagctttgataccaattgttaa |
249 |
Q |
| |
|
|||||||||||||||||||| ||||| |||| |||||| |||| ||| |||| ||||||| ||||||||||| |||| | |||||||||||||| |
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|
| T |
2774039 |
tttcttgatacacacttattcttctcaacccaactgtttctctcag--tcactcaccgtggatcaggccccaataataaagctcttataccaattgttaa |
2773942 |
T |
|
| Q |
250 |
tactaataact |
260 |
Q |
| |
|
||| |||||| |
|
|
| T |
2773941 |
aactgataact |
2773931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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