View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20019_low_26 (Length: 217)
Name: NF20019_low_26
Description: NF20019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20019_low_26 |
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| [»] chr1 (9 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 5e-89; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 20 - 217
Target Start/End: Complemental strand, 8936642 - 8936445
Alignment:
| Q |
20 |
aacatgtgatgcaattacaaatactagtaaccaaacatattgtccaccttcttcatgtggaagaatcacaaacatatcacatccttttcgacttaaggat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || | ||||||||||||| ||||||| ||||||||||||||| |
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| T |
8936642 |
aacatgtgatgcaattacaaatactagtaaccaaacattctgtccaccttcttcatgcggcaaaatcacaaacataacacatccatttcgacttaaggat |
8936543 |
T |
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| Q |
120 |
gatccaacatcatgtggtgatccaaggtatgagttatcctgcgaaaacaacatcacaacgttaactctgttgtcgggtaaatactatgtgaaatcaat |
217 |
Q |
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| T |
8936542 |
gatccaacatcatgtggtgatccaaggtatgagttatcctgcgaaaacaacatcacaatgttaactctgttgtcgggtaaatactatgtgaaatcaat |
8936445 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 20 - 217
Target Start/End: Complemental strand, 8960163 - 8959966
Alignment:
| Q |
20 |
aacatgtgatgcaattacaaatactagtaaccaaacatattgtccaccttcttcatgtggaagaatcacaaacatatcacatccttttcgacttaaggat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||| |
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| T |
8960163 |
aacatgtgatgcaattacaaatactagtaaccaaacatattgtccaccttcttcatgtggcaaaattggaaacatatcacatccttttcgacttaaggat |
8960064 |
T |
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| Q |
120 |
gatccaacatcatgtggtgatccaaggtatgagttatcctgcgaaaacaacatcacaacgttaactctgttgtcgggtaaatactatgtgaaatcaat |
217 |
Q |
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| T |
8960063 |
gacccaacatcatgtggtgatccgaggtacgagttatcctgcgaaaacaacatcacaaccttaactttgttgtcgggtaaatactatgtgaaatcaat |
8959966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 20 - 217
Target Start/End: Complemental strand, 8925001 - 8924804
Alignment:
| Q |
20 |
aacatgtgatgcaattacaaatactagtaaccaaacatattgtccaccttcttcatgtggaagaatcacaaacatatcacatccttttcgacttaaggat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||| | |||| |||||||||||| || |
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| T |
8925001 |
aacatgtgatgcaattacaaatactagtaaccaaacatattgtccaccttcttcatgtggcaaaatcaacaacataaaatatccgtttcgacttaagaat |
8924902 |
T |
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| Q |
120 |
gatccaacatcatgtggtgatccaaggtatgagttatcctgcgaaaacaacatcacaacgttaactctgttgtcgggtaaatactatgtgaaatcaat |
217 |
Q |
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| T |
8924901 |
gatccaacaacctgtggtgatccgaggtacgagttatcctgcgaaaacaacataacaactttaactctattgtcgagtaaatactatgtgaaatcaat |
8924804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 20 - 209
Target Start/End: Complemental strand, 9359515 - 9359326
Alignment:
| Q |
20 |
aacatgtgatgcaattacaaatactagtaaccaaacatattgtccaccttcttcatgtggaagaatcacaaacatatcacatccttttcgacttaaggat |
119 |
Q |
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|||||||||||||||||| ||||| | |||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||| | || |
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| T |
9359515 |
aacatgtgatgcaattactaatacaaataaccaaacatattgtccaccttcttcatgcggcaaaatcacaaacatatcacatccttttcgacttatgaat |
9359416 |
T |
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| Q |
120 |
gatccaacatcatgtggtgatccaaggtatgagttatcctgcgaaaacaacatcacaacgttaactctgttgtcgggtaaatactatgtg |
209 |
Q |
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| T |
9359415 |
gacccaacaagctgtggtgatccgaagtacgagttatcctgcgaaaacaacatcaccgtgttaactctgttttcaggtaaatactatgtg |
9359326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 23 - 217
Target Start/End: Original strand, 9306728 - 9306922
Alignment:
| Q |
23 |
atgtgatgcaattacaaatactagtaaccaaacatattgtccaccttcttcatgtggaagaatcacaaacatatcacatccttttcgacttaaggatgat |
122 |
Q |
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|||| |||||||||| | ||||| ||||||||||||||||||| | || |||||||| | ||||| ||||||| |||||||||||||||| || ||||| |
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| T |
9306728 |
atgttatgcaattactattactaataaccaaacatattgtccatcctcatcatgtggcacaatcagaaacataaaacatccttttcgacttcagaatgat |
9306827 |
T |
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| Q |
123 |
ccaacatcatgtggtgatccaaggtatgagttatcctgcgaaaacaacatcacaacgttaactctgttgtcgggtaaatactatgtgaaatcaat |
217 |
Q |
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||| || || |||||||| |||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||| |
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| T |
9306828 |
ccagcaaactgcggtgatccgaggtatgagttatcctgcgaaaacaacatcacaacgttaactttgttttcaggtaaatactatgtgaaatcaat |
9306922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 20 - 209
Target Start/End: Complemental strand, 9335777 - 9335588
Alignment:
| Q |
20 |
aacatgtgatgcaattacaaatactagtaaccaaacatattgtccaccttcttcatgtggaagaatcacaaacatatcacatccttttcgacttaaggat |
119 |
Q |
| |
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|||||||||||||||||| ||||| | |||| ||||||||||||||||||||||||| || | ||||| ||||| |||||| |||||||||||| || |
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| T |
9335777 |
aacatgtgatgcaattactaatacaaataacaaaacatattgtccaccttcttcatgcggcaaaatcagcaacatcaaacatccgtttcgacttaagaat |
9335678 |
T |
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| Q |
120 |
gatccaacatcatgtggtgatccaaggtatgagttatcctgcgaaaacaacatcacaacgttaactctgttgtcgggtaaatactatgtg |
209 |
Q |
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| T |
9335677 |
gacccagcaacctgtggtgatccaaagtacgagttatcctgcgaaaacaacatcacagcgttaactctgttttcaggtaaatactatgtg |
9335588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 47 - 217
Target Start/End: Original strand, 9475209 - 9475379
Alignment:
| Q |
47 |
taaccaaacatattgtccaccttcttcatgtggaagaatcacaaacatatcacatccttttcgacttaaggatgatccaacatcatgtggtgatccaagg |
146 |
Q |
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|||||||||| |||||||||||||||||||||| | | ||||||||||| |||||| |||||||| ||| ||||||||||| | ||||||||||| ||| |
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| T |
9475209 |
taaccaaacaaattgtccaccttcttcatgtggcaaactcacaaacataaaacatccgtttcgactcaagaatgatccaacaacctgtggtgatccgagg |
9475308 |
T |
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| Q |
147 |
tatgagttatcctgcgaaaacaacatcacaacgttaactctgttgtcgggtaaatactatgtgaaatcaat |
217 |
Q |
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|| ||||||||||||| |||||||||||||||||||||| || | |||||||| ||| ||||||| ||||| |
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| T |
9475309 |
tacgagttatcctgcgtaaacaacatcacaacgttaactttgctttcgggtaactacaatgtgaagtcaat |
9475379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 60 - 211
Target Start/End: Original strand, 9244985 - 9245136
Alignment:
| Q |
60 |
tgtccaccttcttcatgtggaagaatcacaaacatatcacatccttttcgacttaaggatgatccaacatcatgtggtgatccaaggtatgagttatcct |
159 |
Q |
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|||||||||||||||||||||| ||||| ||||| |||||| |||||||||| | |||| |||||| ||||||||||| | |||||||||||||| |
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| T |
9244985 |
tgtccaccttcttcatgtggaaaaatcagcaacatcaaacatccgtttcgacttatgaatgacccaacaagctgtggtgatccgaagtatgagttatcct |
9245084 |
T |
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| Q |
160 |
gcgaaaacaacatcacaacgttaactctgttgtcgggtaaatactatgtgaa |
211 |
Q |
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| T |
9245085 |
gcgaaaacaacatcacagtgttaactctgttttcgggtaagtactatgtgaa |
9245136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 59 - 217
Target Start/End: Complemental strand, 8946097 - 8945939
Alignment:
| Q |
59 |
ttgtccaccttcttcatgtggaagaatcacaaacatatcacatccttttcgacttaaggatgatccaacatcatgtggtgatccaaggtatgagttatcc |
158 |
Q |
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|||||| |||||||||||||| | ||||| |||||| |||| || ||||||||| |||||||| || | || |||||||| ||||| ||||||||| |
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| T |
8946097 |
ttgtcccccttcttcatgtggcaaaatcagcaacataaagtatcccttccgacttaagaatgatccagcaacctgcggtgatccgaggtacgagttatcc |
8945998 |
T |
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| Q |
159 |
tgcgaaaacaacatcacaacgttaactctgttgtcgggtaaatactatgtgaaatcaat |
217 |
Q |
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|||||||| |||||||||| ||||| ||| | || ||||||||| |||| |||||||| |
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| T |
8945997 |
tgcgaaaaaaacatcacaatgttaaagctgctttctggtaaataccatgtaaaatcaat |
8945939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 22 - 217
Target Start/End: Complemental strand, 9168667 - 9168472
Alignment:
| Q |
22 |
catgtgatgcaattacaaatactagtaaccaaacatattgtccaccttcttcatgtggaagaatcacaaacatatcacatccttttcgacttaaggatga |
121 |
Q |
| |
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|||||||||||| || |||| | |||||||| || |||||||||||||||||||| | ||| | ||||||| |||||| || |||||||| |||| |
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| T |
9168667 |
catgtgatgcaactagtaatagtgataaccaaaaattatgtccaccttcttcatgtggcaaaatgagaaacataaaacatccgttccgacttaaaaatga |
9168568 |
T |
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| Q |
122 |
tccaacatcatgtggtgatccaaggtatgagttatcctgcgaaaacaacatcacaacgttaactctgttgtcgggtaaatactatgtgaaatcaat |
217 |
Q |
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||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||||| ||| |||||| | |||||||||||||||||||||||| |
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| T |
9168567 |
tccaacaaactgtggtgatccgaggtacgagttatcctgtgaaaacaacatcacaacgctaagtctgttttggggtaaatactatgtgaaatcaat |
9168472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 47 - 209
Target Start/End: Original strand, 15912700 - 15912862
Alignment:
| Q |
47 |
taaccaaacatattgtccaccttcttcatgtggaagaatcacaaacatatcacatccttttcgacttaaggatgatccaacatcatgtggtgatccaagg |
146 |
Q |
| |
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|||| |||||| ||||||| |||||||||| || | ||||| |||||| |||||| |||||||||||| |||| ||| | | ||||| ||||| || |
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| T |
15912700 |
taacaaaacattttgtccaacttcttcatgcggtaaaatcagcaacataaaacatccatttcgacttaagaatgacccagcgacctgtggggatccgagc |
15912799 |
T |
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| Q |
147 |
tatgagttatcctgcgaaaacaacatcacaacgttaactctgttgtcgggtaaatactatgtg |
209 |
Q |
| |
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|| ||||||||||||||||||||||||||||| |||| |||||| || ||||| ||||||||| |
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| T |
15912800 |
tacgagttatcctgcgaaaacaacatcacaaccttaaatctgttttcaggtaagtactatgtg |
15912862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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