View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20019_low_27 (Length: 210)
Name: NF20019_low_27
Description: NF20019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20019_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 196
Target Start/End: Original strand, 33432634 - 33432818
Alignment:
| Q |
17 |
actatatatttccttttcattcttttgtgatgagtagttttgcacatattttcataattgtcatgttta-----attactagtactataactatgactac |
111 |
Q |
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| T |
33432634 |
actatatatttccttttcattcttttgtgatgagtagttttgcacatattttcataattgtcatgtttaatttaattactagtactataactatgactac |
33432733 |
T |
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| Q |
112 |
aaaaacaatatattcaagtgggttgtaatgtccccatagcaatcaaggtaactatttttctaacccttgatttttctttcctttg |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33432734 |
aaaaacaatatattcaagtgggttgtaatgtccccatagcaatcaaggtaactatttttctaacccttgatttttctttcctttg |
33432818 |
T |
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