View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20019_low_3 (Length: 634)
Name: NF20019_low_3
Description: NF20019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20019_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 537; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 19 - 619
Target Start/End: Complemental strand, 32282639 - 32282039
Alignment:
| Q |
19 |
gatcttaacatgcataatcttctgtgctgcgagcatgcgcctaagttggaatgacttatttccatgtccttctatatgacaaaaatgtctatgtaagtgt |
118 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32282639 |
gatcgtaacatgcataatcttctgtgctgcgagcatgcgcctaagtcggaatgacttatttccatgtccttctatatgacaaaaatgtatatgtaagtgt |
32282540 |
T |
|
| Q |
119 |
ccctgactatgtatttgatgtttagcctcattttagcaatgtactcatatcacactacttggacagtgcacttaaatagattcccatacatcatatttct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32282539 |
ccctgactatgtatttgatgtttagcctcattttagcaatgtactcatatcacactacttggacagtgcacttaaatagattcccatacatcatatttct |
32282440 |
T |
|
| Q |
219 |
gtgttcccacactcctctttttactcttctttcacaaattttccacccatcaccaatcactaacaatggatgcacctctaataatggatgtaccactaac |
318 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
32282439 |
gtgttcccacactcctctttctactcttctttcacaaattttccacccatcaccaagcactaacaatggatgtacctctaataatggatgtaccactaac |
32282340 |
T |
|
| Q |
319 |
aatggatgttccaacggaaccaaacaccgaaaccccacaaatcctaagctcaatcctctcccaaagcagcctctgttactctgaagacacaaaatatctc |
418 |
Q |
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|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||| |
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| T |
32282339 |
aatggatgttccaacggaaccaaacaccaaaaccccgcaaatcctaagctcaatcctctcccaaagcagcctttgttactccgaagacacaaaatttctc |
32282240 |
T |
|
| Q |
419 |
atccgtgaccacctcctctctctcctcacaaactatccatcactcgaacctggaaccaacaccatgatttacaaaattagtcgccgcgccttcaacatag |
518 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
32282239 |
atccgtgaccacctcctctctctcctcacaaactatccaacactcaaacctggaaccaacaccatgatttacaaaattagtctcggcgccttcaacatag |
32282140 |
T |
|
| Q |
519 |
tccaagccgacggcactattcccatgacctacaaagctgtaacttaccatactccaatagttatttctctactggaatcttaccctcgtcaccctcctct |
618 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32282139 |
tccaagccgacagcactattcccatgacctacaaagctgtaacttaccatactccaatagttatttctctactggaatcttaccctcgtcaccctcctct |
32282040 |
T |
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| Q |
619 |
a |
619 |
Q |
| |
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| T |
32282039 |
a |
32282039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 151
Target Start/End: Complemental strand, 1150048 - 1149948
Alignment:
| Q |
49 |
gagcatgcgcctaagttggaatgacttatttccatgtccttctatatgacaaaaatgtctatgtaagtgtccctgactatgtatttgatgtttagcctca |
148 |
Q |
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||||||| | ||||| |||||||||||||||||| | |||||| ||||||||||||||| | ||||| ||| |||| |||| ||||||||| |||||| |
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| T |
1150048 |
gagcatgtgactaagccggaatgacttatttccattttcttcta-atgacaaaaatgtctttataagtatccgtgaccatgt-gttgatgtttggcctca |
1149951 |
T |
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| Q |
149 |
ttt |
151 |
Q |
| |
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||| |
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| T |
1149950 |
ttt |
1149948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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