View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20019_low_4 (Length: 623)
Name: NF20019_low_4
Description: NF20019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20019_low_4 |
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| [»] scaffold1064 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 554; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 20 - 605
Target Start/End: Original strand, 26824951 - 26825536
Alignment:
| Q |
20 |
ctaggacctgcttgttagctttagcttactttgctctatcttatctagagatgagacttgaagcttcttcttcaattacttcttcctcaacatatttgga |
119 |
Q |
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| T |
26824951 |
ctaggacctgcttgttagctttagcttgctttgctctatcttatctagagatgagacttgaagcttcttcttcaattacttcttcctcaacatatttgga |
26825050 |
T |
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| Q |
120 |
catcaccaacttcctagctggccttcttgcttgcttgactggtttcttctctaactgtgcaggtgaggctcttatagtagcaccacctctagttctagtg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
26825051 |
catcaccaacttcctagctggccttcttgcttgcttgactggtttcttctctaactgtgcaggtgaggctcttatagtagcaccacctctagttctggtg |
26825150 |
T |
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| Q |
220 |
ggaagaatttatgaagtgtccagttctgctacttccttatgtacaccagaagcaacaattttgatagttttgaccacctttggtggcttctgaggtatat |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
26825151 |
ggaagaatttatgaagtgtccagttctgctacttccttatgtacaccagaagcaacaattttgatagttttgaccttctttggtggcttctgaggtatat |
26825250 |
T |
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| Q |
320 |
cttttacctcctcagaagttgctttcctcttccttcggctatagcggctcacctatcttgtctggaatctgatcccgcttaatgggaactccagtctcct |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26825251 |
cttttacctcctcagaagttgctttcctcttccttcggctatagcggctcacctatcttgtctggaatctgatcccgcttaatgggaactccagtctcct |
26825350 |
T |
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| Q |
420 |
tgtagtatgcagcaatgtactctgcaattactacaagaggatcttctaatgaaattggtggaaaatcatctaagagatcagtagtccatactgatagctt |
519 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
26825351 |
tgtagtatgcagcaatgtactctgcaattactacaagaggatcttctaatgaaattggtggaaaatcatctaagagatcagtagtcctggctgatagctt |
26825450 |
T |
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| Q |
520 |
caaatcatttttagagattatcacatccatcttccaaattattttcatgaaccccaacatcgttccattaaccactttaccagtct |
605 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
26825451 |
caaatcatttttagagattatcacatccatcttccaaattattttcatgaaccccaacatcgttccattaaccaccttaccagtct |
26825536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1064 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold1064
Description:
Target: scaffold1064; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 368 - 454
Target Start/End: Original strand, 2599 - 2685
Alignment:
| Q |
368 |
tcacctatcttgtctggaatctgatcccgcttaatgggaactccagtctccttgtagtatgcagcaatgtactctgcaattactaca |
454 |
Q |
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|||||||||||||| |||||||||||| |||| ||||| ||| || ||||||||||||||||| |||||||||||||||||| |
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| T |
2599 |
tcacctatcttgtcaggaatctgatcctaactaatcaaaactctagtttctttgtagtatgcagcaatatactctgcaattactaca |
2685 |
T |
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