View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20019_low_6 (Length: 607)
Name: NF20019_low_6
Description: NF20019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20019_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 549; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 11 - 591
Target Start/End: Original strand, 29938380 - 29938960
Alignment:
| Q |
11 |
ctgagatgaaagaagggggacaataaataacttaaactcttttttatgtagtcgagaaaaacaaaaagtcaatgatttcagattgtatgatggaatggtt |
110 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
29938380 |
ctgaaatgaaagaagggggacaataaagaacttaaactcttttttatgtagtcgagaaaaacaaaaaggcaatgatttcagattgtatgatggaatggtt |
29938479 |
T |
|
| Q |
111 |
cattgataccttctcccccacgtcatctttaataagaacagtgtcacctgccatccttccaacaacctctccagtgttagtttctttatcaaaaaagctc |
210 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29938480 |
cattgataccttctcccccatggcatctttaataagaacagtgtcacctgccatccttccaacaacctctccagtgttagtttctttatcaaaaaagctc |
29938579 |
T |
|
| Q |
211 |
acatcttgcctcaaaattgttttaaggtataagcctctaattcttgcactctgtctctccccagtgatcatccagcaagttacctgtagtacatagcaaa |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
29938580 |
acatcttgcctcaaaattgttttaaggtataagcctctaattcttgcactctgtctctccccagtgatcatccagcaagttacctctagtacatagcaaa |
29938679 |
T |
|
| Q |
311 |
catggtttatttggggtcataatgcaccacagtaataagatagactgtacaaattaactgcgaaactaatgtacttacgcaaacatgacaaaacaaagct |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
29938680 |
catggtttatttggggtcataatgcaccacagtaataagatagactgtacaaattaactgcgaaactaatgtacttacgcaaacatgacgcaacaaagct |
29938779 |
T |
|
| Q |
411 |
acccgccgccaggtatacaaatttcagagacacctgaccacagtaagtcgtcgttagtaaatttttaaatgtttgatttaaagttgttacaacctagtgg |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29938780 |
acccgccgccaggtatacaaatttcagagacacctgaccacagtaagtcgtcgttagtaaatttttaaatgtttgatttaaagttgttacaacctagtgg |
29938879 |
T |
|
| Q |
511 |
tttggttgtgaggacattttatgtgaaatttcgggttcaaacccaggtcaccacattcccccttcctacatgtgtttattt |
591 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29938880 |
tttggttgtgaggacattttatgtgaaatttcgggttcaaacccaggtcaccacattcccccttcctacatgtgtttattt |
29938960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 28 - 497
Target Start/End: Complemental strand, 51155688 - 51155217
Alignment:
| Q |
28 |
ggacaataaataacttaaactcttttttat--gtagtcgagaaaaacaaaaagtcaatgatttcagattgtatgatggaatggttcattgataccttctc |
125 |
Q |
| |
|
|||||||||| ||||||||||||||||| | ||||| | |||||||||| | ||| || |||| ||||| ||||||| ||||||||||||||||| |
|
|
| T |
51155688 |
ggacaataaagaacttaaactcttttttttaggtagtttaaaaaaacaaaatgctggtgagttaagatagtatggtggaatgattcattgataccttctc |
51155589 |
T |
|
| Q |
126 |
ccccacgtcatctttaataagaacagtgtcacctgccatccttccaacaacctctccagtgttagtttctttatcaaaaaagctcacatcttgcctcaaa |
225 |
Q |
| |
|
||||| | |||||||||| |||| || ||||||| |||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
51155588 |
ccccatggcatctttaattagaaatgtatcacctgacatccttccaacaacctctccagtattagtttccttatcaaagaagctcacatcttgcctcaaa |
51155489 |
T |
|
| Q |
226 |
attgttttaaggtataagcctctaattcttgcactctgtctctccccagtgatcatccagcaagttacctgtagtacatagcaaacatggtttatttggg |
325 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||| | | |||||||||||||| ||||||| | |
|
|
| T |
51155488 |
attgttttaaggtataaccctctaattcttgcactctgtctctccccggtgatcatccaacaagttagttctggtacatagcaaacagattttattttag |
51155389 |
T |
|
| Q |
326 |
gtcataatgcaccacagtaataagatagactgtacaaattaactgcgaaactaatgtacttacgcaaacatgacaaaacaaagctacccgccgccaggta |
425 |
Q |
| |
|
||| |||| |||| | ||||| |||| || | || |||||| |||||||||||||||||||||| ||||| ||||||| ||||||| |||| ||| |
|
|
| T |
51155388 |
ttcagaatgtaccaaaccaataaattagattggaagaactaactgagaaactaatgtacttacgcaaaaatgacgcaacaaaggtacccgcagccaagta |
51155289 |
T |
|
| Q |
426 |
tacaaatttcagagacacctgaccacagtaagtcgtcgttagtaaatttttaaatgtttgatttaaagttgt |
497 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||| |||||| ||||||||||||| |||||||| |
|
|
| T |
51155288 |
tacaaatttcagagacacctgatcacagtaagtcatcgttagaaaatttctaaatgtttgattcaaagttgt |
51155217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 95 - 497
Target Start/End: Complemental strand, 51144479 - 51144073
Alignment:
| Q |
95 |
gtatgatggaatggttcattgataccttctcccccacgtcatctttaataagaacagtgtcacctgccatccttccaacaacctctccagtgttagtttc |
194 |
Q |
| |
|
|||||||| || | |||| |||||||||||| |||| | |||| |||||||||||||| ||||||| ||| ||||||||||||||||| || |||||||| |
|
|
| T |
51144479 |
gtatgatgtaacgtttcactgataccttctcacccatggcatccttaataagaacagtatcacctgacattcttccaacaacctctcccgtattagtttc |
51144380 |
T |
|
| Q |
195 |
tttatcaaaaaagctcacatcttgcctcaaaattgttttaaggtataagcctctaattcttgcactctgtctctccccagtgatcatccagcaagttacc |
294 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
51144379 |
cttatcaaagaaactcacatcttgcctcaaaattgttttaagatataaccctctaattcttgcactctgtctctccccggtgatcatccagcaagttaat |
51144280 |
T |
|
| Q |
295 |
tgtagtacatagcaaacatggtttat-----ttggggtcataatgcaccacagtaataagatagactgtacaaattaactgcgaaactaatgtacttacg |
389 |
Q |
| |
|
| | ||| |||||||||| ||||| || | |||||||| |||| | ||||| |||| |||| || |||||| |||||||||| ||||||| |
|
|
| T |
51144279 |
tctggtatatagcaaacagattttatttaagtttagttcataatgtaccaaaccaataa-ttagattgtaagaactaactgagaaactaatgcacttacg |
51144181 |
T |
|
| Q |
390 |
caaacatgacaaaacaaagctacccgccgccaggtatacaaatttcagagacacctgaccacagtaagtcgtcgttagtaaatttttaaatgtttgattt |
489 |
Q |
| |
|
|||| ||||| ||||||| ||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
51144180 |
caaaaatgacgcaacaaaggtacccgcagccaagtatacaaatttcagagacacctgatcacagtaagtcgtcgttatcaaatttctaaatgtttgattc |
51144081 |
T |
|
| Q |
490 |
aaagttgt |
497 |
Q |
| |
|
|||||||| |
|
|
| T |
51144080 |
aaagttgt |
51144073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 106 - 290
Target Start/End: Complemental strand, 51198123 - 51197939
Alignment:
| Q |
106 |
tggttcattgataccttctcccccacgtcatctttaataagaacagtgtcacctgccatccttccaacaacctctccagtgttagtttctttatcaaaaa |
205 |
Q |
| |
|
||||||||| |||||||||| |||| | |||||| |||||||||||| ||||| | ||| |||||||||||||||||||| |||||||| |||||||| | |
|
|
| T |
51198123 |
tggttcattaataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttccaacaacctctccagtattagtttccttatcaaaga |
51198024 |
T |
|
| Q |
206 |
agctcacatcttgcctcaaaattgttttaaggtataagcctctaattcttgcactctgtctctccccagtgatcatccagcaagt |
290 |
Q |
| |
|
| ||||||||||||||||||||||||| |||||||||| ||| ||||||||| ||||||||| || || |||||||||||||| |
|
|
| T |
51198023 |
aactcacatcttgcctcaaaattgtttggaggtataagcttctgattcttgcagcctgtctctcaccggtaatcatccagcaagt |
51197939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 111 - 289
Target Start/End: Complemental strand, 51211644 - 51211466
Alignment:
| Q |
111 |
cattgataccttctcccccacgtcatctttaataagaacagtgtcacctgccatccttccaacaacctctccagtgttagtttctttatcaaaaaagctc |
210 |
Q |
| |
|
|||| ||||||| || |||| | | |||| ||||||||| || ||||||| ||| |||||||||||||| ||| | || ||||| || ||||| || || |
|
|
| T |
51211644 |
cattcataccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccactatttgtttccttgtcaaagaaactg |
51211545 |
T |
|
| Q |
211 |
acatcttgcctcaaaattgttttaaggtataagcctctaattcttgcactctgtctctccccagtgatcatccagcaag |
289 |
Q |
| |
|
| ||||||||| ||||||| ||| |||||||| | || ||||||||| |||||||||||| ||||||||||| |||| |
|
|
| T |
51211544 |
atatcttgccttaaaattgctttgaggtataatgcccttattcttgcagcctgtctctcccctgtgatcatccaacaag |
51211466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 567
Target Start/End: Complemental strand, 11999275 - 11999202
Alignment:
| Q |
494 |
ttgttacaacctagtggtttggttgtgaggacattttatgtgaaatttcgggttcaaacccaggtcaccacatt |
567 |
Q |
| |
|
|||| ||| |||||||||| |||||||||||||||||||| ||| ||| ||||||||| || ||||||||| |
|
|
| T |
11999275 |
ttgtcacagcctagtggttgagttgtgaggacattttatgttgaatcccggattcaaacccgggccaccacatt |
11999202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 116 - 284
Target Start/End: Original strand, 49738535 - 49738703
Alignment:
| Q |
116 |
ataccttctcccccacgtcatctttaataagaacagtgtcacctgccatccttccaacaacctctccagtgttagtttctttatcaaaaaagctcacatc |
215 |
Q |
| |
|
|||||||||| |||| | |||||| ||||||||| |||||||||| || |||||||||||||| || |||| ||||| | ||||| ||||| | ||| |
|
|
| T |
49738535 |
ataccttctctcccatggcatcttgaataagaactgtgtcacctgatattcttccaacaacctcaacactgtttgtttccctgtcaaagaagcttatatc |
49738634 |
T |
|
| Q |
216 |
ttgcctcaaaattgttttaaggtataagcctctaattcttgcactctgtctctccccagtgatcatcca |
284 |
Q |
| |
|
|||||| ||||||| ||| ||||||||| | | ||||||||| ||||||||||| |||| |||||| |
|
|
| T |
49738635 |
ttgccttaaaattgctttgaggtataaggcccgtattcttgcagcttgtctctccccggtgaccatcca |
49738703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 117 - 289
Target Start/End: Complemental strand, 36284848 - 36284673
Alignment:
| Q |
117 |
taccttctcccccacgtcatctttaataagaacagtgtcacctgccatccttccaacaacctctccagtgttagtttctt---tatcaaaaaagctcaca |
213 |
Q |
| |
|
||||||||| |||| |||||| |||||||| ||||||| || |||||||||||||||||| ||||| |||||||||| | ||||| |||||| | |
|
|
| T |
36284848 |
taccttctcacccattgcatcttgaataagaattgtgtcacttgacatccttccaacaacctcgccagtattagtttcttccatgtcaaagaagctcgta |
36284749 |
T |
|
| Q |
214 |
tcttgcctcaaaattgttttaaggtataagcctctaattcttgcactctgtctctccccagtgatcatccagcaag |
289 |
Q |
| |
|
|||||||||||||||| | | |||||||| || |||||||| |||||||||||||||| |||||||||| |
|
|
| T |
36284748 |
tcttgcctcaaaattgctctgaggtataaatttcgaattcttgatgcttgtctctccccagtgactatccagcaag |
36284673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 504 - 573
Target Start/End: Original strand, 43794641 - 43794710
Alignment:
| Q |
504 |
ctagtggtttggttgtgaggacattttatgtgaaatttcgggttcaaacccaggtcaccacattccccct |
573 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||| ||||||||||| | |||||||||||||||| |
|
|
| T |
43794641 |
ctagtggtttggttgtgaggacgttttatgtggaatcatgggttcaaacctggatcaccacattccccct |
43794710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 496 - 535
Target Start/End: Original strand, 44324211 - 44324250
Alignment:
| Q |
496 |
gttacaacctagtggtttggttgtgaggacattttatgtg |
535 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
44324211 |
gttacaacctagtggtttggctgtgaggtcattttatgtg |
44324250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 495 - 573
Target Start/End: Original strand, 7258684 - 7258762
Alignment:
| Q |
495 |
tgttacaacctagtggtttggttgtgaggacattttatgtgaaatttcgggttcaaacccaggtcaccacattccccct |
573 |
Q |
| |
|
|||| |||||||||||||| | | ||||||||||||||||| ||| | |||| ||| | |||||||||||||||||| |
|
|
| T |
7258684 |
tgttgcaacctagtggtttagctctgaggacattttatgtggaatcccaggtttgaactcgggtcaccacattccccct |
7258762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 494 - 534
Target Start/End: Original strand, 27776112 - 27776152
Alignment:
| Q |
494 |
ttgttacaacctagtggtttggttgtgaggacattttatgt |
534 |
Q |
| |
|
||||||||| |||||||||||| |||||| ||||||||||| |
|
|
| T |
27776112 |
ttgttacaatctagtggtttggctgtgagcacattttatgt |
27776152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 116 - 258
Target Start/End: Original strand, 38527181 - 38527323
Alignment:
| Q |
116 |
ataccttctcccccacgtcatctttaataagaacagtgtcacctgccatccttccaacaacctctccagtgttagtttctttatcaaaaaagctcacatc |
215 |
Q |
| |
|
|||||||||| |||| | |||||| |||||||||||| ||||| | ||| ||||| ||||| ||||| ||||| |||||||||||||| || | ||||| |
|
|
| T |
38527181 |
ataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttcctacaacttctcctgtgtttgtttctttatcaaagaaagtaacatc |
38527280 |
T |
|
| Q |
216 |
ttgcctcaaaattgttttaaggtataagcctctaattcttgca |
258 |
Q |
| |
|
||| || || |||||||| | || || ||||| ||||||||| |
|
|
| T |
38527281 |
ttgtcttaatattgttttcaaatacaatcctcttattcttgca |
38527323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 116 - 258
Target Start/End: Original strand, 38568482 - 38568624
Alignment:
| Q |
116 |
ataccttctcccccacgtcatctttaataagaacagtgtcacctgccatccttccaacaacctctccagtgttagtttctttatcaaaaaagctcacatc |
215 |
Q |
| |
|
|||||||||| |||| | |||||| |||||||||||| ||||||| ||| || || | ||| ||||| ||||| |||||||||||||| || | ||||| |
|
|
| T |
38568482 |
ataccttctcacccatggcatcttgaataagaacagtatcacctgacattctccctataacttctcctgtgtttgtttctttatcaaagaaagtaacatc |
38568581 |
T |
|
| Q |
216 |
ttgcctcaaaattgttttaaggtataagcctctaattcttgca |
258 |
Q |
| |
|
||| || || |||||||| | || || ||||| ||||||||| |
|
|
| T |
38568582 |
ttgtcttaatattgttttcaaatacaatcctcttattcttgca |
38568624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 493 - 552
Target Start/End: Original strand, 16807931 - 16807990
Alignment:
| Q |
493 |
gttgttacaacctagtggtttggttgtgaggacattttatgtgaaatttcgggttcaaac |
552 |
Q |
| |
|
||||||| ||| ||||||||||| |||||||||||||||||| |||| ||||||||||| |
|
|
| T |
16807931 |
gttgttataacatagtggtttggctgtgaggacattttatgttgaattccgggttcaaac |
16807990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 494 - 572
Target Start/End: Original strand, 52017763 - 52017841
Alignment:
| Q |
494 |
ttgttacaacctagtggtttggttgtgaggacattttatgtgaaatttcgggttcaaacccaggtcaccacattccccc |
572 |
Q |
| |
|
||||| |||| ||||||||||| |||||||||||||| |||| || || ||| ||||||||||||||||||||||| |
|
|
| T |
52017763 |
ttgttgcaacatagtggtttggctgtgaggacattttgtgtggaaccctggattcgaacccaggtcaccacattccccc |
52017841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 493 - 568
Target Start/End: Original strand, 29234230 - 29234305
Alignment:
| Q |
493 |
gttgttacaacctagtggtttggttgtgaggacattttatgtgaaatttcgggttcaaacccaggtcaccacattc |
568 |
Q |
| |
|
||||||||||| | || ||||||||||||||| |||||| ||| ||| || ||||||| || ||||||||||||| |
|
|
| T |
29234230 |
gttgttacaacatggtagtttggttgtgaggatattttacgtggaatctcatgttcaaatccgggtcaccacattc |
29234305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 493 - 539
Target Start/End: Complemental strand, 35856781 - 35856735
Alignment:
| Q |
493 |
gttgttacaacctagtggtttggttgtgaggacattttatgtgaaat |
539 |
Q |
| |
|
||||||||||||||||||||||| ||||| | |||||||||||||| |
|
|
| T |
35856781 |
gttgttacaacctagtggtttggctgtgaacatattttatgtgaaat |
35856735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 535
Target Start/End: Complemental strand, 25971128 - 25971087
Alignment:
| Q |
494 |
ttgttacaacctagtggtttggttgtgaggacattttatgtg |
535 |
Q |
| |
|
|||||||||||||||||||||| |||||| | |||||||||| |
|
|
| T |
25971128 |
ttgttacaacctagtggtttggctgtgagaatattttatgtg |
25971087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 504 - 567
Target Start/End: Original strand, 35981482 - 35981545
Alignment:
| Q |
504 |
ctagtggtttggttgtgaggacattttatgtgaaatttcgggttcaaacccaggtcaccacatt |
567 |
Q |
| |
|
|||||||||||| ||||| |||||||||| || ||| |||||||||||||| |||||||||||| |
|
|
| T |
35981482 |
ctagtggtttggctgtgaagacattttatatggaatctcgggttcaaacccgggtcaccacatt |
35981545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 497 - 565
Target Start/End: Original strand, 8575741 - 8575809
Alignment:
| Q |
497 |
ttacaacctagtggtttggttgtgaggacattttatgtgaaatttcgggttcaaacccaggtcaccaca |
565 |
Q |
| |
|
||||| |||| |||||||| |||||||| ||||||| || ||| ||||||||||||| |||| ||||| |
|
|
| T |
8575741 |
ttacagcctaatggtttggctgtgaggatattttatatggaatcccgggttcaaacccgggtctccaca |
8575809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 532
Target Start/End: Original strand, 32855950 - 32855987
Alignment:
| Q |
495 |
tgttacaacctagtggtttggttgtgaggacattttat |
532 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
32855950 |
tgttacaacctagtggtttggatgtgagaacattttat |
32855987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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