View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20019_low_7 (Length: 483)

Name: NF20019_low_7
Description: NF20019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20019_low_7
NF20019_low_7
[»] chr5 (15 HSPs)
chr5 (11-466)||(36150449-36150903)
chr5 (18-171)||(13932763-13932917)
chr5 (78-179)||(36150996-36151097)
chr5 (82-184)||(17990741-17990843)
chr5 (115-175)||(20399041-20399101)
chr5 (78-157)||(22843767-22843846)
chr5 (89-182)||(17990996-17991088)
chr5 (82-154)||(22843898-22843969)
chr5 (208-274)||(788270-788336)
chr5 (11-157)||(8999723-8999873)
chr5 (204-273)||(36868347-36868416)
chr5 (206-269)||(19215439-19215502)
chr5 (204-274)||(32278701-32278771)
chr5 (78-145)||(9637753-9637817)
chr5 (44-110)||(8999597-8999665)
[»] chr7 (24 HSPs)
chr7 (204-457)||(26449348-26449601)
chr7 (11-156)||(35315868-35316014)
chr7 (11-147)||(33190078-33190215)
chr7 (11-171)||(26073340-26073501)
chr7 (11-171)||(26097127-26097288)
chr7 (78-179)||(32047236-32047337)
chr7 (74-179)||(25658390-25658495)
chr7 (43-171)||(35316071-35316200)
chr7 (11-170)||(47254-47414)
chr7 (43-179)||(26073146-26073283)
chr7 (43-179)||(26096933-26097070)
chr7 (43-171)||(33189893-33190022)
chr7 (100-171)||(7511090-7511161)
chr7 (11-148)||(527452-527590)
chr7 (87-179)||(36642610-36642702)
chr7 (77-171)||(5964232-5964326)
chr7 (74-171)||(21297724-21297815)
chr7 (77-157)||(32056651-32056730)
chr7 (204-242)||(19407870-19407908)
chr7 (78-171)||(42709905-42709998)
chr7 (82-157)||(5964014-5964090)
chr7 (87-174)||(32056866-32056953)
chr7 (102-156)||(24556349-24556403)
chr7 (86-139)||(6080052-6080105)
[»] scaffold0024 (2 HSPs)
scaffold0024 (16-170)||(70764-70919)
scaffold0024 (74-156)||(70614-70696)
[»] chr8 (25 HSPs)
chr8 (11-171)||(5074448-5074609)
chr8 (11-147)||(23488783-23488919)
chr8 (41-179)||(23488923-23489061)
chr8 (11-157)||(38225457-38225604)
chr8 (11-171)||(16997104-16997267)
chr8 (11-157)||(11732618-11732765)
chr8 (11-179)||(42026946-42027115)
chr8 (11-171)||(42950352-42950513)
chr8 (55-157)||(7905658-7905760)
chr8 (43-179)||(41480735-41480872)
chr8 (55-157)||(42950583-42950685)
chr8 (57-182)||(38225676-38225801)
chr8 (11-64)||(41480624-41480678)
chr8 (78-179)||(34153475-34153575)
chr8 (78-178)||(42027208-42027308)
chr8 (11-128)||(18385779-18385895)
chr8 (57-147)||(11732839-11732929)
chr8 (78-179)||(5074255-5074355)
chr8 (74-179)||(23488590-23488695)
chr8 (204-273)||(27786783-27786852)
chr8 (32-155)||(42373420-42373544)
chr8 (199-241)||(36206448-36206490)
chr8 (105-170)||(16997292-16997357)
chr8 (206-274)||(29369160-29369228)
chr8 (383-431)||(43113472-43113520)
[»] chr4 (23 HSPs)
chr4 (11-179)||(35251582-35251751)
chr4 (11-171)||(51103561-51103722)
chr4 (11-160)||(4892580-4892730)
chr4 (69-184)||(51103362-51103477)
chr4 (11-179)||(22886420-22886592)
chr4 (11-179)||(22938084-22938256)
chr4 (43-184)||(4892383-4892525)
chr4 (54-179)||(39864093-39864218)
chr4 (11-155)||(43049295-43049437)
chr4 (11-171)||(4872741-4872902)
chr4 (11-171)||(45302334-45302495)
chr4 (106-179)||(35004475-35004548)
chr4 (55-170)||(35251397-35251512)
chr4 (11-155)||(54511512-54511654)
chr4 (55-157)||(4872571-4872672)
chr4 (204-274)||(24239838-24239908)
chr4 (204-242)||(37050056-37050094)
chr4 (102-171)||(40681720-40681789)
chr4 (131-179)||(5808245-5808293)
chr4 (11-147)||(42077060-42077193)
chr4 (11-53)||(40681566-40681608)
chr4 (359-429)||(9241674-9241745)
chr4 (11-48)||(34932253-34932290)
[»] chr2 (16 HSPs)
chr2 (11-179)||(29469518-29469689)
chr2 (11-171)||(36937699-36937860)
chr2 (11-167)||(26407416-26407573)
chr2 (11-146)||(29166738-29166876)
chr2 (74-179)||(36937507-36937610)
chr2 (11-170)||(25961093-25961253)
chr2 (88-179)||(26407676-26407767)
chr2 (204-274)||(14296253-14296323)
chr2 (204-270)||(18811704-18811770)
chr2 (204-273)||(8413813-8413882)
chr2 (74-139)||(18143969-18144034)
chr2 (204-241)||(31092371-31092408)
chr2 (74-157)||(29166965-29167048)
chr2 (361-407)||(8413749-8413795)
chr2 (204-272)||(37344674-37344742)
chr2 (106-157)||(30786444-30786495)
[»] chr3 (28 HSPs)
chr3 (11-167)||(46163834-46163990)
chr3 (11-171)||(55213976-55214137)
chr3 (11-147)||(32808183-32808321)
chr3 (11-179)||(36012610-36012779)
chr3 (11-179)||(45708637-45708806)
chr3 (55-179)||(46164060-46164184)
chr3 (74-179)||(33140537-33140642)
chr3 (43-179)||(43804116-43804253)
chr3 (43-185)||(26121948-26122091)
chr3 (55-179)||(32808394-32808520)
chr3 (13-145)||(2051504-2051637)
chr3 (11-155)||(12089016-12089161)
chr3 (11-167)||(3157676-3157832)
chr3 (43-184)||(45708440-45708580)
chr3 (43-170)||(26244173-26244301)
chr3 (204-273)||(16893132-16893201)
chr3 (43-170)||(26244870-26244998)
chr3 (11-167)||(33140291-33140448)
chr3 (359-431)||(16893217-16893289)
chr3 (80-168)||(7565744-7565832)
chr3 (11-55)||(26122149-26122193)
chr3 (372-431)||(24347280-24347339)
chr3 (11-129)||(26245055-26245174)
chr3 (82-156)||(43031390-43031464)
chr3 (78-171)||(39840647-39840740)
chr3 (80-147)||(7565626-7565692)
chr3 (204-247)||(51524922-51524965)
chr3 (78-171)||(48338299-48338392)
[»] chr1 (26 HSPs)
chr1 (11-139)||(27134049-27134178)
chr1 (11-171)||(49784532-49784691)
chr1 (11-179)||(4067076-4067243)
chr1 (204-341)||(49491809-49491945)
chr1 (11-171)||(34535486-34535652)
chr1 (78-170)||(27133831-27133923)
chr1 (11-157)||(38208281-38208428)
chr1 (19-171)||(23329307-23329460)
chr1 (11-155)||(33321232-33321377)
chr1 (50-179)||(49784757-49784889)
chr1 (74-141)||(4066923-4066990)
chr1 (77-186)||(2464050-2464159)
chr1 (55-172)||(34535299-34535416)
chr1 (351-429)||(34566102-34566180)
chr1 (207-337)||(50903410-50903544)
chr1 (120-179)||(38208524-38208583)
chr1 (93-155)||(2464189-2464251)
chr1 (78-179)||(20993857-20993958)
chr1 (359-431)||(49491688-49491760)
chr1 (204-270)||(41035024-41035090)
chr1 (359-431)||(50903288-50903357)
chr1 (78-171)||(7481186-7481279)
chr1 (204-270)||(3374358-3374424)
chr1 (203-241)||(14344109-14344147)
chr1 (82-171)||(7481046-7481134)
chr1 (43-146)||(33321071-33321175)
[»] chr6 (15 HSPs)
chr6 (11-179)||(67536-67705)
chr6 (11-171)||(16434815-16434975)
chr6 (74-179)||(67342-67447)
chr6 (43-157)||(10388243-10388358)
chr6 (11-170)||(10388415-10388577)
chr6 (82-170)||(30122812-30122900)
chr6 (77-157)||(6714521-6714601)
chr6 (103-171)||(6169382-6169450)
chr6 (43-170)||(30847636-30847764)
chr6 (204-274)||(25167898-25167968)
chr6 (74-181)||(3687625-3687735)
chr6 (74-139)||(3687853-3687918)
chr6 (204-274)||(4263364-4263434)
chr6 (120-169)||(3605243-3605292)
chr6 (207-243)||(10990082-10990118)
[»] scaffold0753 (1 HSPs)
scaffold0753 (382-429)||(5280-5327)
[»] scaffold0022 (1 HSPs)
scaffold0022 (87-179)||(122548-122640)
[»] scaffold0081 (1 HSPs)
scaffold0081 (106-170)||(8705-8769)


Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 11 - 466
Target Start/End: Complemental strand, 36150903 - 36150449
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaacactaatagagccagagacaaatctgagaaacatttgacaaa-gacattgaccattt 109  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||  |||||||    
T  36150903 aatatccaaaagacattgagtcaataacactcaaa-tacaaaacactaatagagccagtgacaaatctgagaaacatttgacaaaagacatgaaccattt 36150805  T
Q  110 tgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgatttaatcgatatcaaatttcaatttagtcggaat 209  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||| | || ||||||    
T  36150804 tgagttattcatagagttagggaccaatttgagaatttagtacatagatagggaccaatttggtgatttacttgatatcaaatttcaactcagccggaat 36150705  T
Q  210 gaggactcgtgcccaaaagggtacctccaaagctacctcggcatataccgaatagttggttcaatggtaaaacaatacatgggaagtgttatttgtaaca 309  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  36150704 gaggactcgtgcccaaaaggatacctccaaagctacctcggcatataccaaatagttggctcaatggtaaaacaatacatgggaagtgttatttgcaaca 36150605  T
Q  310 tattgttcagacaacaagacctgttctatgatactaatgattgaactttggtgtttagctagtagcttctgtcatttctctgttgttgttcttttagcca 409  Q
     |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||      
T  36150604 cattgttcagacaacaagacctgttctatgatactgatgattgaactttggtgtttagctagtagcttctgtcatttctctgttgttgttgttttagcag 36150505  T
Q  410 ttgctttgttagtttaattcatctgtgatgtaatgttttgctccttctattttgttt 466  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  36150504 ttgctttgttagtttaattcatctgtgatgtaatgttttgctccttct-ttttgttt 36150449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 13932763 - 13932917
Alignment:
Q  18 aaaagacattgagtcattaacactcaaaatacaaaaca-ctaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattttgagtta 116  Q
    |||||| |||||| |||||||||||||||||||||| | ||||||||| |   ||  |||||||||||| ||||||||||||||||||||||||||||||    
T  13932763 aaaagatattgagccattaacactcaaaatacaaaataactaatagagtcgtggatcaatctgagaaacgtttgacaaagacattgaccattttgagtta 13932862  T
Q  117 ttcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 171  Q
    || ||||||||  | | |||||||||||||||||||||| |||||||||||||||    
T  13932863 ttaatagagtcgagaatcaatttgagaatttagtacaaaaatagggaccaatttg 13932917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 78 - 179
Target Start/End: Original strand, 36150996 - 36151097
Alignment:
Q  78 tgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgatt 177  Q
    |||||||| |||||||||||||  ||||||||||||||||||||||||| ||| |||||||||||||||| ||||||| | | |||||||| ||||||||    
T  36150996 tgagaaacgtttgacaaagacagagaccattttgagttattcatagagttaggaaccaatttgagaatttggtacaaatacaaggaccaatatggtgatt 36151095  T
Q  178 ta 179  Q
    ||    
T  36151096 ta 36151097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 82 - 184
Target Start/End: Complemental strand, 17990843 - 17990741
Alignment:
Q  82 aaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgatttaat 181  Q
    |||| ||||||||| |||  ||||||||||||||||| ||||||||||||||||| ||||||||||  ||| |||| |  ||||||||||||| |||| |    
T  17990843 aaacttttgacaaaaacaaagaccattttgagttattaatagagtcagggaccaaattgagaatttgatacgaagacaatgaccaatttggtggtttact 17990744  T
Q  182 cga 184  Q
    |||    
T  17990743 cga 17990741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 115 - 175
Target Start/End: Original strand, 20399041 - 20399101
Alignment:
Q  115 tattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtga 175  Q
    |||| |||||||||||||| ||||||||||| |  ||||||||||||||||||||||||||    
T  20399041 tattaatagagtcagggactaatttgagaatgtcttacaaagatagggaccaatttggtga 20399101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 157
Target Start/End: Complemental strand, 22843846 - 22843767
Alignment:
Q  78 tgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaaga 157  Q
    ||||||| ||||||||||||||  ||||||||||| ||||| ||||| | ||||||||| |||| ||||| |||||||||    
T  22843846 tgagaaatatttgacaaagacagagaccattttgaattattaatagaatgagggaccaaattgaaaatttggtacaaaga 22843767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 89 - 182
Target Start/End: Original strand, 17990996 - 17991088
Alignment:
Q  89 tgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgatttaatc 182  Q
    ||||||||||| |||||  |||||| |||| ||||||||| | ||||| ||||||||||| |||||||| || ||||||||| ||| |||||||    
T  17990996 tgacaaagacaatgaccgctttgagctattaatagagtcaag-accaaattgagaatttaatacaaagagagagaccaatttagtggtttaatc 17991088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 22843898 - 22843969
Alignment:
Q  82 aaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaa 154  Q
    ||||||||||||||||||| ||||||||| ||||||| |||||||| |  ||| |||||||||||| ||||||    
T  22843898 aaacatttgacaaagacatggaccattttaagttattaatagagtc-gaaaccgatttgagaatttggtacaa 22843969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 274
Target Start/End: Complemental strand, 788336 - 788270
Alignment:
Q  208 atgaggactcgtgcccaaaagggtacctccaaagctacctcggcatataccgaatagttggttcaat 274  Q
    |||||||||||||||||||||||| ||||||||||  ||| | ||||||  ||||| ||||||||||    
T  788336 atgaggactcgtgcccaaaagggttcctccaaagccgccttgacatatatagaataattggttcaat 788270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 11 - 157
Target Start/End: Original strand, 8999723 - 8999873
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaaca----ctaatagagccagagacaaatctgagaaacatttgacaaagacattgacca 106  Q
    |||||||||||||||||||  |||||||  || ||||| ||||||    ||||||||| ||| ||  ||||| |||| ||||||| | || ||| |||||    
T  8999723 aatatccaaaagacattgaaccattaacgttcgaaatataaaacaacaactaatagagtcagggatcaatctcagaagcatttgatagaggcatggacca 8999822  T
Q  107 ttttgagttattcatagagtcagggaccaatttgagaatttagtacaaaga 157  Q
    |||||| | ||| || ||||||  |||||| ||||||||||  ||||||||    
T  8999823 ttttgaatcattaatggagtcacagaccaaattgagaatttgatacaaaga 8999873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 204 - 273
Target Start/End: Original strand, 36868347 - 36868416
Alignment:
Q  204 cggaatgaggactcgtgcccaaaagggtacctccaaagctacctcggcatataccgaatagttggttcaa 273  Q
    |||||||||| | |||| |||||||||| ||||||||||||||| | || ||||  ||||||||||||||    
T  36868347 cggaatgagggcccgtgtccaaaagggttcctccaaagctaccttgacagatacataatagttggttcaa 36868416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 269
Target Start/End: Original strand, 19215439 - 19215502
Alignment:
Q  206 gaatgaggactcgtgcccaaaagggtacctccaaagctacctcggcatataccgaatagttggt 269  Q
    |||||||||| || |||||||||||||||| |||| || ||| |||| |||| |||||||||||    
T  19215439 gaatgaggacccgagcccaaaagggtaccttcaaaactgccttggcagatacagaatagttggt 19215502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 274
Target Start/End: Complemental strand, 32278771 - 32278701
Alignment:
Q  204 cggaatgaggactcgtgcccaaaagggtacctccaaagctacctcggcatataccgaatagttggttcaat 274  Q
    |||||||| || |||| ||||||||||||||||||||||  ||| | || |||| ||||||| ||||||||    
T  32278771 cggaatgaagattcgttcccaaaagggtacctccaaagccgccttgacagatacagaatagtgggttcaat 32278701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 145
Target Start/End: Original strand, 9637753 - 9637817
Alignment:
Q  78 tgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaat 145  Q
    |||||||| |||||||||||||||||||||||| |   | | ||||||| |||||| |||||||||||    
T  9637753 tgagaaacttttgacaaagacattgaccattttaa---aataatagagttagggactaatttgagaat 9637817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 8999665 - 8999597
Alignment:
Q  44 aaatacaaaaca-ctaatagagccagagacaaatctgagaaac-atttgacaaagacattgaccatttt 110  Q
    |||||||||||| ||||||||||| ||||| ||||| | |||| |||||||||| |||| |||||||||    
T  8999665 aaatacaaaacaactaatagagccggagaccaatctaaaaaacgatttgacaaaaacatagaccatttt 8999597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 204 - 457
Target Start/End: Complemental strand, 26449601 - 26449348
Alignment:
Q  204 cggaatgaggactcgtgcccaaaagggtacctccaaagctacctcggcatataccgaatagttggttcaatggtaaaacaatacatgggaagtgttattt 303  Q
    ||||||||||||||||| ||||||||||||||||||| || ||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  26449601 cggaatgaggactcgtgtccaaaagggtacctccaaaactgcctcgacatataccaaatagttggttcaatggtaaaacaatacatggaaagtgttattt 26449502  T
Q  304 gtaacatattgttcagacaacaagacctgttctatgatactaatgattgaactttggtgtttagctagtagcttctgtcatttctctgttgttgttcttt 403  Q
    |||||| ||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  26449501 gtaacacattgttctgacaacaagacctgttctatgatactgatgattgaacttgggtgtttagctagtagcttctgtcatttctctattgttgttcttt 26449402  T
Q  404 tagccattgctttgttagtttaattcatctgtgatgtaatgttttgctccttct 457  Q
    || |  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26449401 taacagttgctttgttagtttaattcatctgtgatgtaatgttttgctccttct 26449348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 11 - 156
Target Start/End: Complemental strand, 35316014 - 35315868
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaaca-ctaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattt 109  Q
    |||||||||||||||||| |||| ||||||||||||||||||||| ||||||||| ||| ||  ||||||||||||||||||||||||||| ||| ||||    
T  35316014 aatatccaaaagacattgggtcaataacactcaaaatacaaaacaactaatagagtcagggagcaatctgagaaacatttgacaaagacatagactattt 35315915  T
Q  110 tgagttattcatagagtcagggaccaatttgagaatttagtacaaag 156  Q
    ||||||||| ||||||||||||||| | |||| ||||| ||||||||    
T  35315914 tgagttattaatagagtcagggaccgaattgacaatttggtacaaag 35315868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 11 - 147
Target Start/End: Original strand, 33190078 - 33190215
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaaca-ctaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattt 109  Q
    |||||||||||||||||||| |||||||||| ||||||||||||| ||||||||| ||||||| |||||||||||||||| |||||||||  ||||||||    
T  33190078 aatatccaaaagacattgagacattaacacttaaaatacaaaacaactaatagagtcagagaccaatctgagaaacatttaacaaagacagagaccattt 33190177  T
Q  110 tgagttattcatagagtcagggaccaatttgagaattt 147  Q
    ||| ||||| ||||||||||||| ||| |||| |||||    
T  33190178 tgaattattaatagagtcagggatcaaattgaaaattt 33190215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 11 - 171
Target Start/End: Original strand, 26073340 - 26073501
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaacact-aatagagccagagacaaatctgagaaacatttgacaaagacattgaccattt 109  Q
    ||||||||||| || |||| ||  ||||||||||||||||||||| | |||| || ||||||| ||||| ||||||||||||||||||||  ||||||||    
T  26073340 aatatccaaaacacgttgaatcgataacactcaaaatacaaaacaattaataaaggcagagaccaatctaagaaacatttgacaaagacagagaccattt 26073439  T
Q  110 tgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 171  Q
    ||| ||||| ||||||||||||||||| |||| ||||| ||||||||| || ||||||||||    
T  26073440 tgaattattaatagagtcagggaccaaattgaaaatttggtacaaagacagtgaccaatttg 26073501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 11 - 171
Target Start/End: Original strand, 26097127 - 26097288
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaacact-aatagagccagagacaaatctgagaaacatttgacaaagacattgaccattt 109  Q
    ||||||||||| || |||| ||  ||||||||||||||||||||| | |||| || ||||||| ||||| ||||||||||||||||||||  ||||||||    
T  26097127 aatatccaaaacacgttgaatcgataacactcaaaatacaaaacaattaataaaggcagagaccaatctaagaaacatttgacaaagacagagaccattt 26097226  T
Q  110 tgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 171  Q
    ||| ||||| ||||||||||||||||| |||| ||||| ||||||||| || ||||||||||    
T  26097227 tgaattattaatagagtcagggaccaaattgaaaatttggtacaaagacagtgaccaatttg 26097288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 78 - 179
Target Start/End: Complemental strand, 32047337 - 32047236
Alignment:
Q  78 tgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgatt 177  Q
    |||||||  |||||||||||||  ||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  32047337 tgagaaaagtttgacaaagacagagaccattttgagttattaatagagtcagagaccaatttgagaatttggtacaaagatagggaccaatttggtgatt 32047238  T
Q  178 ta 179  Q
    ||    
T  32047237 ta 32047236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 74 - 179
Target Start/End: Complemental strand, 25658495 - 25658390
Alignment:
Q  74 aatctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggt 173  Q
    ||||||| |||| ||||||||| ||| |||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||| |||||  |    
T  25658495 aatctgataaacgtttgacaaaaacaatgaccattttgagttattaacagagtcagggaccaatttgagaatttggtacaaagatagggactaatttact 25658396  T
Q  174 gattta 179  Q
    ||||||    
T  25658395 gattta 25658390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 43 - 171
Target Start/End: Original strand, 35316071 - 35316200
Alignment:
Q  43 aaaatacaaaaca-ctaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttga 141  Q
    ||||| ||||||| |||||||||  || ||| |||||||||||| ||||| |||||||  ||||||||||||||||| |||||||||||||||||||| |    
T  35316071 aaaatgcaaaacaactaatagagttagggaccaatctgagaaacgtttgagaaagacagggaccattttgagttattaatagagtcagggaccaatttaa 35316170  T
Q  142 gaatttagtacaaagatagggaccaatttg 171  Q
    |||||| ||||||||| || ||| ||||||    
T  35316171 gaatttggtacaaagacagagactaatttg 35316200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 11 - 170
Target Start/End: Original strand, 47254 - 47414
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaaca-ctaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattt 109  Q
    ||||| ||||||| |||||| | |||||||||||||||||||||| ||||||||  ||| ||| ||||||| |||  || ||||||||||  || |||||    
T  47254 aatattcaaaagatattgagccgttaacactcaaaatacaaaacaactaatagaatcagggaccaatctgaaaaatgttcgacaaagacagagatcattt 47353  T
Q  110 tgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaattt 170  Q
    ||||||||| |||||| ||  ||||||||| | ||||| |||||||||||| |||||||||    
T  47354 tgagttattaatagagacaaagaccaatttaataatttggtacaaagatagagaccaattt 47414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 43 - 179
Target Start/End: Complemental strand, 26073283 - 26073146
Alignment:
Q  43 aaaatacaaaaca-ctaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttga 141  Q
    ||||| ||||||| ||||||||| ||| ||| |||||||||||| ||||||||||| | |||||||||||||||||| ||||||| || |  ||||||||    
T  26073283 aaaatgcaaaacaactaatagaggcagggaccaatctgagaaacgtttgacaaagaaagtgaccattttgagttattaatagagttagaggtcaatttga 26073184  T
Q  142 gaatttagtacaaagatagggaccaatttggtgattta 179  Q
     ||||| ||||||||| | | |||||||||||| ||||    
T  26073183 aaatttggtacaaagacatgaaccaatttggtggttta 26073146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 43 - 179
Target Start/End: Complemental strand, 26097070 - 26096933
Alignment:
Q  43 aaaatacaaaaca-ctaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttga 141  Q
    ||||| ||||||| ||||||||| ||| ||| ||| |||||||| ||||||||||| | |||||||||||||||||| ||||||| || |  ||||||||    
T  26097070 aaaatgcaaaacaactaatagaggcagggaccaatttgagaaacgtttgacaaagaaagtgaccattttgagttattaatagagttagaggtcaatttga 26096971  T
Q  142 gaatttagtacaaagatagggaccaatttggtgattta 179  Q
     ||||| ||||||||| | | |||||||||||| ||||    
T  26096970 aaatttggtacaaagacatgaaccaatttggtggttta 26096933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 43 - 171
Target Start/End: Complemental strand, 33190022 - 33189893
Alignment:
Q  43 aaaatacaaaaca-ctaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttga 141  Q
    ||||| ||||||| ||||||||| ||| ||| |||||||||||| ||||| |||||||   |||||||||||||||| |||||||||  |||||||||||    
T  33190022 aaaatgcaaaacaactaatagagtcagggaccaatctgagaaacttttgataaagacaaataccattttgagttattaatagagtcaaagaccaatttga 33189923  T
Q  142 gaatttagtacaaagatagggaccaatttg 171  Q
    ||| || ||||||||| || ||||| ||||    
T  33189922 gaagttggtacaaagacagagaccagtttg 33189893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 100 - 171
Target Start/End: Complemental strand, 7511161 - 7511090
Alignment:
Q  100 ttgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 171  Q
    ||||||||||||||||||| | |||||||  ||||||||||||||||| |||||||||||||||||||||||    
T  7511161 ttgaccattttgagttattaacagagtcattgaccaatttgagaatttggtacaaagatagggaccaatttg 7511090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 11 - 148
Target Start/End: Complemental strand, 527590 - 527452
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaac-actaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattt 109  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||||| | |  ||  ||| ||||||||||||||||||||||||||  ||| || |    
T  527590 aatatctaaaaaacattgagtcattaacactcaaaatacaaaacaactaacaaaatcactgaccaatctgagaaacatttgacaaagacagagacaatct 527491  T
Q  110 tgagttattcatagagtcagggaccaatttgagaattta 148  Q
    ||| ||||| ||| || ||| ||||||||| | ||||||    
T  527490 tgaattattaatatagacagagaccaatttaataattta 527452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 87 - 179
Target Start/End: Complemental strand, 36642702 - 36642610
Alignment:
Q  87 tttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgattta 179  Q
    |||||||||||||  ||  || |||||||||| |||||||||||||||||||||| ||||| |||||||||||| |||||||||  |||||||    
T  36642702 tttgacaaagacagagatgatgttgagttattaatagagtcagggaccaatttgaaaatttggtacaaagatagagaccaatttaatgattta 36642610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 77 - 171
Target Start/End: Original strand, 5964232 - 5964326
Alignment:
Q  77 ctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 171  Q
    ||||||||| ||||| ||||||| |||||||||||||||||| | |||||| | |||||| |||||||||| ||| ||||||| ||| |||||||    
T  5964232 ctgagaaacgtttgataaagacagtgaccattttgagttattaaaagagtcggagaccaaattgagaatttggtataaagatatggatcaatttg 5964326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 74 - 171
Target Start/End: Complemental strand, 21297815 - 21297724
Alignment:
Q  74 aatctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 171  Q
    ||||||| |||||||||||||||||       ||||||||||||| |||||||||| ||| || || ||||||| ||||||||| |||||||||||||    
T  21297815 aatctgataaacatttgacaaagact------attttgagttattaatagagtcagagactaaattaagaatttggtacaaagacagggaccaatttg 21297724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 157
Target Start/End: Complemental strand, 32056730 - 32056651
Alignment:
Q  77 ctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaaga 157  Q
    ||||||||  |||||||||||||  ||||||||| ||||||| ||||||| ||||||||| |||| ||||| |||||||||    
T  32056730 ctgagaaatgtttgacaaagacaaagaccattttaagttattaatagagt-agggaccaaattgaaaatttggtacaaaga 32056651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 19407908 - 19407870
Alignment:
Q  204 cggaatgaggactcgtgcccaaaagggtacctccaaagc 242  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  19407908 cggaatgaggacccgtgcccaaaagggtacctccaaagc 19407870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 78 - 171
Target Start/End: Complemental strand, 42709998 - 42709905
Alignment:
Q  78 tgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 171  Q
    |||||||| |||||||||||||||||| ||||| |  |||| |||||||| | |||  ||||||||||    |||||||| |||||||||||||    
T  42709998 tgagaaacttttgacaaagacattgactattttaaaatattaatagagtcggagactgatttgagaatcacttacaaagacagggaccaatttg 42709905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 82 - 157
Target Start/End: Complemental strand, 5964090 - 5964014
Alignment:
Q  82 aaacatttgacaaagacattgaccat-tttgagttattcatagagtcagggaccaatttgagaatttagtacaaaga 157  Q
    |||||||| ||| |||||  |||||| ||||||||||| |||||||||| ||| || |||||||||| |||||||||    
T  5964090 aaacatttaacagagacagggaccatgtttgagttattaatagagtcagagactaaattgagaatttggtacaaaga 5964014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 174
Target Start/End: Original strand, 32056866 - 32056953
Alignment:
Q  87 tttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtg 174  Q
    |||||||||||||   |||||||| ||||||| ||| |||| |||||||| |||||||||| ||||| | | | | ||||||||||||    
T  32056866 tttgacaaagacagaaaccattttaagttattaataaagtccgggaccaaattgagaatttggtacagatacaagaaccaatttggtg 32056953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 24556349 - 24556403
Alignment:
Q  102 gaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaag 156  Q
    ||||||||| ||||||| |||||||||  |||||| |||| ||||||||||||||    
T  24556349 gaccattttaagttattaatagagtcaaagaccaaattgaaaatttagtacaaag 24556403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 6080052 - 6080105
Alignment:
Q  86 atttgacaaagacattgaccattttgagttattcatagagtcagggaccaattt 139  Q
    |||| |||||||||||||  ||||||||||||| | |||||||| |||||||||    
T  6080052 atttaacaaagacattgattattttgagttattaacagagtcagagaccaattt 6080105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 116; Significance: 8e-59; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 70764 - 70919
Alignment:
Q  16 ccaaaagacattgagtcattaacactcaaaatacaaaaca-ctaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattttgagt 114  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||| |||||||||||||| ||||||||||||     
T  70764 ccaaaagacattgagtcattaacactcaaaatacaaaacaactaatagagtcagagaccaatctgagaaacgtttgacaaagacatggaccattttgagc 70863  T
Q  115 tattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaattt 170  Q
    |||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  70864 tattaatagagtcagagaccaatttgagaatttagtacaaagacagggaccaattt 70919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 74 - 156
Target Start/End: Complemental strand, 70696 - 70614
Alignment:
Q  74 aatctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaag 156  Q
    |||||||||||| |||||||||||||   | |||||| ||||||| ||| ||| ||||||||||||||||||| |||||||||    
T  70696 aatctgagaaacgtttgacaaagacagaaatcattttaagttattaataaagtgagggaccaatttgagaattgagtacaaag 70614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 8e-53; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 11 - 171
Target Start/End: Original strand, 5074448 - 5074609
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaaca-ctaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||  || ||||||| ||||||||||||||||||  ||||||||    
T  5074448 aatatccaaaagacattgagtcattaacactcaaaatacaaaacaactaatagagtcaggaaccaatctgaaaaacatttgacaaagacagggaccattt 5074547  T
Q  110 tgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 171  Q
    ||||||||| |||||| ||||||||||||||||||||| ||||||||||| ||| |||||||    
T  5074548 tgagttattaatagagacagggaccaatttgagaatttggtacaaagatatggatcaatttg 5074609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 11 - 147
Target Start/End: Original strand, 23488783 - 23488919
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaacactaatagagccagagacaaatctgagaaacatttgacaaagacattgaccatttt 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||| ||||||||||| ||||||||||||||  |||||||||    
T  23488783 aatatccaaaagacattgagtcattaacactcaaaatacaaaacactaatagagtcaaggaccaatctgagaaatatttgacaaagacagagaccatttt 23488882  T
Q  111 gagttattcatagagtcagggaccaatttgagaattt 147  Q
    || ||||||||||||||||||||||||||||||||||    
T  23488883 gaattattcatagagtcagggaccaatttgagaattt 23488919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 41 - 179
Target Start/End: Original strand, 23488923 - 23489061
Alignment:
Q  41 tcaaaatacaaaacactaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttg 140  Q
    |||||||||||||||||||||||| ||  ||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  23488923 tcaaaatacaaaacactaatagagtcaaggaccaatttgagaaacatttgacaaagacaatgaccattttgagttattcatagagtcatggaccaatttg 23489022  T
Q  141 agaatttagtacaaagatagggaccaatttggtgattta 179  Q
    ||||||| ||||||||| | ||| |||||||||||||||    
T  23489023 agaatttggtacaaagacaaggatcaatttggtgattta 23489061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 11 - 157
Target Start/End: Complemental strand, 38225604 - 38225457
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaaca-ctaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattt 109  Q
    |||||||||||||||||||| |||||||||| ||||| ||||||| ||||||||| ||||||| ||||||| ||| |||||||||| ||   ||||||||    
T  38225604 aatatccaaaagacattgagccattaacacttaaaatgcaaaacaactaatagagtcagagaccaatctgaaaaatatttgacaaataccaagaccattt 38225505  T
Q  110 tgagttattcatagagtcagggaccaatttgagaatttagtacaaaga 157  Q
    ||||||||| ||||||| ||||||||| |||||||||| |||||||||    
T  38225504 tgagttattaatagagtaagggaccaaattgagaatttggtacaaaga 38225457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 11 - 171
Target Start/End: Complemental strand, 16997267 - 16997104
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaaca-ctaatagagccaga--gacaaatctgagaaacatttgacaaagacattgaccat 107  Q
    ||||| |||||||||||||  |||||| ||||||||||||||||| ||||||||| ||    ||| ||  ||||||||||||||||||||||  ||||||    
T  16997267 aatattcaaaagacattgaaccattaaaactcaaaatacaaaacaactaatagagtcatgtggaccaacatgagaaacatttgacaaagacaaagaccat 16997168  T
Q  108 tttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 171  Q
    ||||||||||| ||||||| ||| ||||| |||| ||||| |||||||||||||||||||||||    
T  16997167 tttgagttattaatagagttaggaaccaaattgataatttggtacaaagatagggaccaatttg 16997104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 11 - 157
Target Start/End: Complemental strand, 11732765 - 11732618
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaaca-ctaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattt 109  Q
    ||||| |||| || ||||||||||||||||||||||||||||||| | ||||||| || |||| ||||| ||||||| || |||| ||||  ||||||||    
T  11732765 aatattcaaatgatattgagtcattaacactcaaaatacaaaacaacaaatagagtcaaagaccaatctaagaaacacttcacaatgacagagaccattt 11732666  T
Q  110 tgagttattcatagagtcagggaccaatttgagaatttagtacaaaga 157  Q
    ||| ||||| |||||||||| |||||| |||| ||||| |||||||||    
T  11732665 tgaattattaatagagtcagtgaccaaattgaaaatttggtacaaaga 11732618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 11 - 179
Target Start/End: Complemental strand, 42027115 - 42026946
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaac-actaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattt 109  Q
    ||||||||||||||||||||||||||| |||||||||||||||| | |||||||| ||  ||  ||| |||||||  ||||||||||||    | |||||    
T  42027115 aatatccaaaagacattgagtcattaaaactcaaaatacaaaacaattaatagagtcacggatcaatttgagaaaggtttgacaaagacgaaaaacattt 42027016  T
Q  110 tgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgattta 179  Q
    ||||||||| ||| |||| ||||||||||| | ||||| ||| ||||| |  || |||||||||||||||    
T  42027015 tgagttattaataaagtcggggaccaatttaaaaatttggtaaaaagacaatgatcaatttggtgattta 42026946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 11 - 171
Target Start/End: Complemental strand, 42950513 - 42950352
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaacact-aatagagccagagacaaatctgagaaacatttgacaaagacattgaccattt 109  Q
    ||||| |||||||||||||  |||||||||||||||||||||||| | || ||||  || ||| ||||||||||||||||||||| | ||| || |||||    
T  42950513 aatattcaaaagacattgaaccattaacactcaaaatacaaaacaattaacagagttagggaccaatctgagaaacatttgacaacggcatagatcattt 42950414  T
Q  110 tgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 171  Q
    ||||||||| ||| ||| ||||| ||| |||| |||||  |||||||| | | |||||||||    
T  42950413 tgagttattaataaagttagggatcaaattgaaaatttgatacaaagacaagaaccaatttg 42950352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 55 - 157
Target Start/End: Complemental strand, 7905760 - 7905658
Alignment:
Q  55 actaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaa 154  Q
    |||||||||||||| ||| ||||||| |||| ||||| |||||||  || |||||||||||||| |||||||||||||| ||||||| ||||| ||||||    
T  7905760 actaatagagccagggaccaatctgaaaaacgtttgataaagacagagatcattttgagttattaatagagtcagggactaatttgaaaatttggtacaa 7905661  T
Q  155 aga 157  Q
    |||    
T  7905660 aga 7905658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 43 - 179
Target Start/End: Original strand, 41480735 - 41480872
Alignment:
Q  43 aaaatacaaaaca-ctaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttga 141  Q
    ||||||||||||| ||||||||| ||  ||  ||| ||| |||  ||||||||||||| | |||||||||||||||| ||| ||||||||| |||| |||    
T  41480735 aaaatacaaaacaactaatagagtcaaggatcaatatgaaaaatgtttgacaaagacagtaaccattttgagttattaataaagtcagggaacaatatga 41480834  T
Q  142 gaatttagtacaaagatagggaccaatttggtgattta 179  Q
    |||||| |||||||||||||||| || ||| |||||||    
T  41480835 gaatttggtacaaagatagggactaaattgatgattta 41480872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 55 - 157
Target Start/End: Original strand, 42950583 - 42950685
Alignment:
Q  55 actaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaa 154  Q
    |||||||||| ||||||  ||| |||||||  ||||||||||||| |||||||||||||||||| |||||||||| |||| |||| | |||||| |||||    
T  42950583 actaatagagtcagagatcaatatgagaaatgtttgacaaagacaatgaccattttgagttattaatagagtcagagacctatttaaaaatttaatacaa 42950682  T
Q  155 aga 157  Q
    |||    
T  42950683 aga 42950685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 182
Target Start/End: Original strand, 38225676 - 38225801
Alignment:
Q  57 taatagagccagagacaaatctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaag 156  Q
    |||||||| ||| ||| ||| |||| ||  ||||||||||||||  |||||||| | ||||| |||||||||||||||||||||| ||||| ||| ||||    
T  38225676 taatagagtcagggaccaatatgaggaatgtttgacaaagacatgaaccattttaaattattaatagagtcagggaccaatttgataatttggtataaag 38225775  T
Q  157 atagggaccaatttggtgatttaatc 182  Q
    |  ||||||||||| ||| |||||||    
T  38225776 actgggaccaatttcgtggtttaatc 38225801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 41480678 - 41480624
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaac-actaatagag 64  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  41480678 aatattcaaaagacattgagtcattaacactcaaaatacaaaacaactaatagag 41480624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 78 - 179
Target Start/End: Original strand, 34153475 - 34153575
Alignment:
Q  78 tgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgatt 177  Q
    |||||||| ||||||||||||||  | |||||||||||||| |||||||||  ||||||||||| ||||| ||||||| | || || |||||||||| ||    
T  34153475 tgagaaacgtttgacaaagacata-atcattttgagttattaatagagtcatagaccaatttgataatttggtacaaaaacagtgatcaatttggtggtt 34153573  T
Q  178 ta 179  Q
    ||    
T  34153574 ta 34153575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 78 - 178
Target Start/End: Original strand, 42027208 - 42027308
Alignment:
Q  78 tgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgatt 177  Q
    ||||||| ||||||||||||||   |||||||| ||||||| |||||||||| ||||||||| ||||||| ||| ||||| |  ||| ||||| ||||||    
T  42027208 tgagaaagatttgacaaagacaagaaccattttaagttattaatagagtcagagaccaatttaagaattttgtataaagacaatgactaatttagtgatt 42027307  T
Q  178 t 178  Q
    |    
T  42027308 t 42027308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 128
Target Start/End: Complemental strand, 18385895 - 18385779
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaac-actaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattt 109  Q
    ||||| ||||||| ||||||||||||||||| |||||||||||| | |||| |||   | ||| ||||||| |||  |||||||||||||  ||| ||||    
T  18385895 aatattcaaaagatattgagtcattaacacttaaaatacaaaacaattaatggagttggggaccaatctgataaatgtttgacaaagaca--gacaattt 18385798  T
Q  110 tgagttattcatagagtca 128  Q
    ||||||||| |||||||||    
T  18385797 tgagttattaatagagtca 18385779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 57 - 147
Target Start/End: Original strand, 11732839 - 11732929
Alignment:
Q  57 taatagagccagagacaaatctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaattt 147  Q
    |||||||| ||| ||| ||| ||||||||| |||| ||||||| || |||||||||||||||  ||||||||||||| ||| ||| |||||    
T  11732839 taatagagtcagggaccaatttgagaaacacttgataaagacaatggccattttgagttattactagagtcagggactaatatgataattt 11732929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 78 - 179
Target Start/End: Complemental strand, 5074355 - 5074255
Alignment:
Q  78 tgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgatt 177  Q
    ||||||||||||||||||||||  ||  ||||||||||||||||||||| | |||||||||| | |||||  ||||||||| | || |||||| ||| ||    
T  5074355 tgagaaacatttgacaaagacagagattattttgagttattcatagagtta-ggaccaatttaaaaatttgatacaaagatggagatcaatttagtgttt 5074257  T
Q  178 ta 179  Q
    ||    
T  5074256 ta 5074255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 74 - 179
Target Start/End: Complemental strand, 23488695 - 23488590
Alignment:
Q  74 aatctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggt 173  Q
    ||||| ||||||||||||||||| ||   |||||||||||||||||||||| |||| ||  |||| || ||||| ||| ||||| || |||| |||||||    
T  23488695 aatctaagaaacatttgacaaagtcaggaaccattttgagttattcatagaatcagtgattaattagaaaatttggtagaaagacagagacccatttggt 23488596  T
Q  174 gattta 179  Q
     |||||    
T  23488595 aattta 23488590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 204 - 273
Target Start/End: Complemental strand, 27786852 - 27786783
Alignment:
Q  204 cggaatgaggactcgtgcccaaaagggtacctccaaagctacctcggcatataccgaatagttggttcaa 273  Q
    |||||||||||  ||||||||||| ||| ||||||||||||||| | || ||||  ||||||||||||||    
T  27786852 cggaatgaggagccgtgcccaaaatggttcctccaaagctaccttgacagatacaaaatagttggttcaa 27786783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 155
Target Start/End: Original strand, 42373420 - 42373544
Alignment:
Q  32 cattaacactcaaaatacaaaacac-taatagagccagagacaaatctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagg 130  Q
    |||||||||||||||||| |||||  |||||||| || ||||||||   |||||  ||||||||||| |  |||||| || | ||||| ||||||| |||    
T  42373420 cattaacactcaaaatactaaacaagtaatagagtcaaagacaaattatagaaaagtttgacaaagatagagaccatcttaaattattaatagagttagg 42373519  T
Q  131 gaccaatttgagaatttagtacaaa 155  Q
     |||||||| | |||||| ||||||    
T  42373520 aaccaatttaaaaatttaatacaaa 42373544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 199 - 241
Target Start/End: Complemental strand, 36206490 - 36206448
Alignment:
Q  199 ttagtcggaatgaggactcgtgcccaaaagggtacctccaaag 241  Q
    |||||||||||||||||||||||| ||||| || |||||||||    
T  36206490 ttagtcggaatgaggactcgtgcctaaaagagttcctccaaag 36206448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 170
Target Start/End: Original strand, 16997292 - 16997357
Alignment:
Q  105 cattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaattt 170  Q
    ||||| || ||||| |||||||  ||||||  |||||||||||||||||| |||| ||||||||||    
T  16997292 catttggaattattaatagagttggggacctgtttgagaatttagtacaatgatatggaccaattt 16997357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 206 - 274
Target Start/End: Original strand, 29369160 - 29369228
Alignment:
Q  206 gaatgaggactcgtgcccaaaagggtacctccaaagctacctcggcatataccgaatagttggttcaat 274  Q
    |||||||||| ||||||||||||| ||| |||||| |  ||| |||| |||| ||||||||||| ||||    
T  29369160 gaatgaggacccgtgcccaaaaggatacatccaaatccgccttggcagatacagaatagttggtccaat 29369228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 383 - 431
Target Start/End: Complemental strand, 43113520 - 43113472
Alignment:
Q  383 atttctctgttgttgttcttttagccattgctttgttagtttaattcat 431  Q
    |||||| || ||||||||||||||| || | ||||||||||||||||||    
T  43113520 atttctttgatgttgttcttttagcaatagttttgttagtttaattcat 43113472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 11 - 179
Target Start/End: Original strand, 35251582 - 35251751
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaaca-ctaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattt 109  Q
    ||||||||||||||||||||| |||||||||||||||| |||||| ||||||||| ||||||| |||||||||||||||||| |||||||  |||||||     
T  35251582 aatatccaaaagacattgagttattaacactcaaaataaaaaacaactaatagagtcagagaccaatctgagaaacatttgagaaagacaaagaccatta 35251681  T
Q  110 tgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgattta 179  Q
    | ||||||| ||||||| ||||||||| |||||||||| ||||||||| |||||||||||||||| ||||    
T  35251682 taagttattaatagagttagggaccaaattgagaatttggtacaaagacagggaccaatttggtggttta 35251751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 11 - 171
Target Start/End: Original strand, 51103561 - 51103722
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaaca-ctaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattt 109  Q
    |||||||||||||||||||  |||||||||||||||||||||||| ||||||||  ||   || ||| |||||||  ||||| |||||||  ||| ||||    
T  51103561 aatatccaaaagacattgaaccattaacactcaaaatacaaaacaactaatagaatcatgaaccaatttgagaaatgtttgataaagacagagactattt 51103660  T
Q  110 tgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 171  Q
    ||||||||| |||||||||| ||||||||||| ||||| |||||||||||||||||||||||    
T  51103661 tgagttattaatagagtcagtgaccaatttgaaaatttggtacaaagatagggaccaatttg 51103722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 11 - 160
Target Start/End: Original strand, 4892580 - 4892730
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaaca-ctaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattt 109  Q
    ||||||||||||||| |||  |||||||||||||||||||||||| ||||||||| |   ||| |||||||||||||||| |||||||||  ||||||||    
T  4892580 aatatccaaaagacagtgaaccattaacactcaaaatacaaaacaactaatagagtcgtggaccaatctgagaaacatttcacaaagacaaagaccattt 4892679  T
Q  110 tgagttattcatagagtcagggaccaatttgagaatttagtacaaagatag 160  Q
    ||| || |  |||||||| |||||||| |||||||||| ||||||||||||    
T  4892680 tgaattgtaaatagagtctgggaccaaattgagaatttggtacaaagatag 4892730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 69 - 184
Target Start/End: Complemental strand, 51103477 - 51103362
Alignment:
Q  69 agacaaatctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaat 168  Q
    |||| |||| ||||||| |||||||||| || |||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||| || |||||||    
T  51103477 agaccaatccgagaaacttttgacaaaggcaatgaccattttgaattattaatagagtcagggaccaatttgagaatttggtacaaagacagagaccaat 51103378  T
Q  169 ttggtgatttaatcga 184  Q
    || |||||||| ||||    
T  51103377 ttagtgatttactcga 51103362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 11 - 179
Target Start/End: Complemental strand, 22886592 - 22886420
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaaca-ctaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattt 109  Q
    ||||| |||||||||||||| ||| |||||| ||||||||||||| ||||||||   |||||| ||||||||||||||||||||||||||   || ||||    
T  22886592 aatattcaaaagacattgagccatgaacactaaaaatacaaaacaactaatagaattagagactaatctgagaaacatttgacaaagacaagtactattt 22886493  T
Q  110 tgagt---tattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgattta 179  Q
    |||||   |||| ||| ||||||| |||||||| ||||||| ||||||| | | | ||||||||| |||||||    
T  22886492 tgagttattattaataaagtcaggaaccaatttaagaatttggtacaaatacatgaaccaatttgatgattta 22886420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 11 - 179
Target Start/End: Complemental strand, 22938256 - 22938084
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaaca-ctaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattt 109  Q
    ||||| |||||||||||||| ||| |||||| ||||||||||||| ||||||||   |||||| ||||||||||||||||||||||||||   || ||||    
T  22938256 aatattcaaaagacattgagccatgaacactaaaaatacaaaacaactaatagaattagagactaatctgagaaacatttgacaaagacaagtactattt 22938157  T
Q  110 tgagt---tattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgattta 179  Q
    |||||   |||| ||| ||||||| |||||||| ||||||| ||||||| | | | ||||||||| |||||||    
T  22938156 tgagttattattaataaagtcaggaaccaatttaagaatttggtacaaatacatgaaccaatttgatgattta 22938084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 43 - 184
Target Start/End: Complemental strand, 4892525 - 4892383
Alignment:
Q  43 aaaatacaaaaca-ctaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttga 141  Q
    ||||| ||||||| ||||||||| ||| ||| ||||| |||||  ||||||||||||| | |||||||||||||||| |||||||| | ||| ||||| |    
T  4892525 aaaatgcaaaacaactaatagagtcagggaccaatctaagaaatgtttgacaaagacagtaaccattttgagttattaatagagtcggagactaatttaa 4892426  T
Q  142 gaatttagtacaaagatagggaccaatttggtgatttaatcga 184  Q
    |||||| ||||||||| || ||||||||||||| |||| ||||    
T  4892425 gaatttggtacaaagacagagaccaatttggtggtttactcga 4892383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 39864218 - 39864093
Alignment:
Q  54 cactaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtaca 153  Q
    ||||||||||| ||||||| ||| |||||||  |||||||||||||  || |||||||||||||| |||||||| ||||||||||| | ||||| |||||    
T  39864218 cactaatagagacagagaccaatatgagaaaagtttgacaaagacagggatcattttgagttattaatagagtcggggaccaatttaaaaatttggtaca 39864119  T
Q  154 aagatagggaccaatttggtgattta 179  Q
    |||| || |||||||||  |||||||    
T  39864118 aagacagagaccaatttaatgattta 39864093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 11 - 155
Target Start/End: Original strand, 43049295 - 43049437
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaac-actaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattt 109  Q
    |||||||||||||||||||   ||||||| | |||||||||||| |||||||||| ||||||  |||||||||||| ||||||||| |||   |||||||    
T  43049295 aatatccaaaagacattgaactattaacattaaaaatacaaaacaactaatagagtcagagatcaatctgagaaacgtttgacaaaaaca---accattt 43049391  T
Q  110 tgagttattcatagagtcagggaccaatttgagaatttagtacaaa 155  Q
    ||| ||||| ||||| |||| || |||||| ||||||| |||||||    
T  43049392 tgaattattaatagactcagagatcaatttaagaatttggtacaaa 43049437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 11 - 171
Target Start/End: Original strand, 4872741 - 4872902
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaac-actaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattt 109  Q
    ||||| |||||||||||||| ||||||||| ||||||||||||| |||||||||| ||||||| ||| ||||||||| || | |||||||  || |||||    
T  4872741 aatatacaaaagacattgagccattaacacccaaaatacaaaacaactaatagagtcagagaccaatatgagaaacacttcataaagacagagatcattt 4872840  T
Q  110 tgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 171  Q
    | ||||||| |||||| ||   | ||| || ||||||| ||||||||| ||| || ||||||    
T  4872841 taagttattaatagaggcaaaaatcaaatttagaatttggtacaaagacaggtacaaatttg 4872902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 11 - 171
Target Start/End: Complemental strand, 45302495 - 45302334
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaaca-ctaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattt 109  Q
    ||||||||||||||| ||    |||||| |||||||||||||||| |||||||||  |||||| ||| |||||||||||| ||||||||| |||  ||||    
T  45302495 aatatccaaaagacactggactattaacgctcaaaatacaaaacaactaatagagttagagaccaatttgagaaacatttcacaaagacagtgaatattt 45302396  T
Q  110 tgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 171  Q
    ||| |||||  |||||||||||| ||| || |||||||  || ||||| ||||| |||||||    
T  45302395 tgaattattagtagagtcagggatcaaattaagaatttgatataaagagagggatcaatttg 45302334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 106 - 179
Target Start/End: Complemental strand, 35004548 - 35004475
Alignment:
Q  106 attttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgattta 179  Q
    ||||||||||||| |||||||||||||||||| ||||||||| ||||||||| |||||  || |||||||||||    
T  35004548 attttgagttattaatagagtcagggaccaatatgagaatttggtacaaagacagggattaaattggtgattta 35004475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 55 - 170
Target Start/End: Complemental strand, 35251512 - 35251397
Alignment:
Q  55 actaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaa 154  Q
    |||||||| | ||||||  ||||| | ||| |||||||||||||||  |||||||||||||||| ||||| ||    |||||||| | ||||||||||||    
T  35251512 actaatagcgtcagagatcaatctaaaaaatatttgacaaagacataaaccattttgagttattaatagaatcctaaaccaatttaaaaatttagtacaa 35251413  T
Q  155 agatagggaccaattt 170  Q
    || |||||||||||||    
T  35251412 aggtagggaccaattt 35251397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 11 - 155
Target Start/End: Original strand, 54511512 - 54511654
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaaca-ctaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattt 109  Q
    |||||||||||||| ||||   | ||| ||||||||||||||||| ||||||||| ||| ||| ||| | | |||| |||||| |||| || ||||||||    
T  54511512 aatatccaaaagacgttga---actaatactcaaaatacaaaacagctaatagagtcagggaccaatttaaaaaacgtttgactaagatatagaccattt 54511608  T
Q  110 tgagttattcatagagtcagggaccaatttgagaatttagtacaaa 155  Q
    ||| ||||| ||||| ||  |||||||||| ||||||| |||||||    
T  54511609 tgaattattaatagattcgtggaccaatttaagaatttggtacaaa 54511654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 55 - 157
Target Start/End: Complemental strand, 4872672 - 4872571
Alignment:
Q  55 actaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaa 154  Q
    |||||||||| ||| ||  ||||| |||||| |||||||||||||  || |||||||||||||| ||||||| || || |||||| ||||||| ||||||    
T  4872672 actaatagagtcagggatcaatct-agaaacgtttgacaaagacagagatcattttgagttattaatagagttagagatcaatttaagaatttggtacaa 4872574  T
Q  155 aga 157  Q
    |||    
T  4872573 aga 4872571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 204 - 274
Target Start/End: Complemental strand, 24239908 - 24239838
Alignment:
Q  204 cggaatgaggactcgtgcccaaaagggtacctccaaagctacctcggcatataccgaatagttggttcaat 274  Q
    |||||||||||| |||||||||||||||||||| ||||||| || |||| ||||  ||||||||| |||||    
T  24239908 cggaatgaggacccgtgcccaaaagggtacctcaaaagctatcttggcagatacataatagttggctcaat 24239838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 37050056 - 37050094
Alignment:
Q  204 cggaatgaggactcgtgcccaaaagggtacctccaaagc 242  Q
    |||||||||||||||||||||||||||||||||||||||    
T  37050056 cggaatgaggactcgtgcccaaaagggtacctccaaagc 37050094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 102 - 171
Target Start/End: Original strand, 40681720 - 40681789
Alignment:
Q  102 gaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 171  Q
    ||||||||| ||||||| ||||| |||||||||||||||||||||  ||||||||| | | |||||||||    
T  40681720 gaccattttaagttattaatagaatcagggaccaatttgagaattcggtacaaagacatgaaccaatttg 40681789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 5808245 - 5808293
Alignment:
Q  131 gaccaatttgagaatttagtacaaagatagggaccaatttggtgattta 179  Q
    ||||||||||||||||| |||||||||||||||||||||| || |||||    
T  5808245 gaccaatttgagaatttggtacaaagatagggaccaatttagtaattta 5808293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 147
Target Start/End: Complemental strand, 42077193 - 42077060
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaac-actaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattt 109  Q
    ||||| ||||| |||||||| ||||| ||||||||||||||||| |||||||||  | |     ||||| | |||| | ||||||||| ||  | || ||    
T  42077193 aatattcaaaaaacattgagccattatcactcaaaatacaaaacaactaatagaatcgg----gaatctaaaaaacttctgacaaagatatacatcaatt 42077098  T
Q  110 tgagttattcatagagtcagggaccaatttgagaattt 147  Q
    ||||||||| ||| ||||| ||||||||||||||||||    
T  42077097 tgagttattaataaagtcaaggaccaatttgagaattt 42077060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 40681608 - 40681566
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaa 53  Q
    |||||||| |||||||||||  |||||||||||||||||||||    
T  40681608 aatatccataagacattgagctattaacactcaaaatacaaaa 40681566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 429
Target Start/End: Original strand, 9241674 - 9241745
Alignment:
Q  359 ggtgtttagctagtagcttctgtcatttctctgttgttgttcttttagccatt--gctttgttagtttaattc 429  Q
    |||||||||||||||||||||  |||||| || ||||||||||||||||  ||  ||||||||||||| ||||    
T  9241674 ggtgtttagctagtagcttcttccatttccct-ttgttgttcttttagcagttgcgctttgttagttttattc 9241745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 34932253 - 34932290
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaata 48  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  34932253 aatattcaaaagacattgagccattaacactcaaaata 34932290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 4e-45; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 11 - 179
Target Start/End: Complemental strand, 29469689 - 29469518
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaacact-aatagagccagag--acaaatctgagaaacatttgacaaagacattgaccat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||| |  || ||||||||||||||||||||||||||  ||||||    
T  29469689 aatatccaaaagacattgagtcattaacactcaaaatacaaaacaattaatagagtcagggggactaatctgagaaacatttgacaaagacagcgaccat 29469590  T
Q  108 tttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgattta 179  Q
    ||||||||||| |||||||||  ||||||||||||||||| ||||||||  || ||||||||| | ||||||    
T  29469589 tttgagttattaatagagtcaatgaccaatttgagaatttggtacaaaggcagagaccaatttcgagattta 29469518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 11 - 171
Target Start/End: Original strand, 36937699 - 36937860
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaaca-ctaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattt 109  Q
    |||||| |||||| | ||||||||||||||||||||||||||||| ||||||||| ||| ||  ||| |||||||||||| |||||||||  ||||||||    
T  36937699 aatatctaaaagatactgagtcattaacactcaaaatacaaaacaactaatagagtcagggatcaatttgagaaacatttcacaaagacagagaccattt 36937798  T
Q  110 tgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 171  Q
    | ||||||| ||||||||| ||||||| |||||||||| ||||||||| | | |||||||||    
T  36937799 tcagttattaatagagtcaaggaccaaattgagaatttggtacaaagacaagaaccaatttg 36937860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 11 - 167
Target Start/End: Complemental strand, 26407573 - 26407416
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaaca-ctaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattt 109  Q
    ||||| ||||||| |||||  ||||||||||||||||||||| || ||||||||| ||  ||| |||||||||||  |||||||||||||  ||||||||    
T  26407573 aatattcaaaagatattgaaccattaacactcaaaatacaaatcaactaatagagacatggaccaatctgagaaaagtttgacaaagacagggaccattt 26407474  T
Q  110 tgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaa 167  Q
    ||||||||| |||||||| |  |||||||||| ||||| ||||||||| | |||||||    
T  26407473 tgagttattaatagagtctgaaaccaatttgaaaatttggtacaaagacatggaccaa 26407416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 11 - 146
Target Start/End: Complemental strand, 29166876 - 29166738
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaaca-ctaatagagccagagacaaatctgaga--aacatttgacaaagacattgaccat 107  Q
    ||||| ||||||||||| |||||||||||||| |||||||||||| ||||||||  ||| | | |||||||||  ||||||| |||||||||  |||| |    
T  29166876 aatattcaaaagacattaagtcattaacactcgaaatacaaaacaactaatagactcagggcccaatctgagagaaacatttcacaaagacaaggaccgt 29166777  T
Q  108 tttgagttattcatagagtcagggaccaatttgagaatt 146  Q
    ||||||||||| |||||||| |||||||| || ||||||    
T  29166776 tttgagttattaatagagtcggggaccaaattaagaatt 29166738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 74 - 179
Target Start/End: Complemental strand, 36937610 - 36937507
Alignment:
Q  74 aatctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggt 173  Q
    ||||| |||||  |||||||||||||  |||||||  |||||||| |||||||||| ||||||||||||||||| |||||||||||||||| ||||||||    
T  36937610 aatctaagaaatgtttgacaaagacaaagaccatt--gagttattaatagagtcagagaccaatttgagaatttggtacaaagatagggactaatttggt 36937513  T
Q  174 gattta 179  Q
    | ||||    
T  36937512 ggttta 36937507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 11 - 170
Target Start/End: Complemental strand, 25961253 - 25961093
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaacact-aatagagccagagacaaatctgagaaacatttgacaaagacattgaccattt 109  Q
    |||||| |||| |||||||| |||||||||| | | ||||||||| | ||||||| || |||| ||| |||||||| ||||| ||| |||  ||||||||    
T  25961253 aatatctaaaaaacattgagccattaacacttacagtacaaaacaattaatagagtcaaagactaatatgagaaacgtttgataaaaacagggaccattt 25961154  T
Q  110 tgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaattt 170  Q
    | ||||||| ||||||||| |||  ||||| ||| |||| |||||||  ||||||||||||    
T  25961153 taagttattaatagagtcatggataaatttaagattttaatacaaagtcagggaccaattt 25961093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 88 - 179
Target Start/End: Original strand, 26407676 - 26407767
Alignment:
Q  88 ttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgattta 179  Q
    ||||||||||||  ||||||||||| ||||| |||||||||||||||||| ||| ||||| ||||||||| |||||| || ||| |||||||    
T  26407676 ttgacaaagacagggaccattttgaattattaatagagtcagggaccaatatgaaaatttggtacaaagacagggactaaattgatgattta 26407767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 204 - 274
Target Start/End: Complemental strand, 14296323 - 14296253
Alignment:
Q  204 cggaatgaggactcgtgcccaaaagggtacctccaaagctacctcggcatataccgaatagttggttcaat 274  Q
    ||||||||| ||||||| |||||||||||||||||||| | ||| |||| ||||  |||||||||||||||    
T  14296323 cggaatgagcactcgtgtccaaaagggtacctccaaagatgccttggcagatacataatagttggttcaat 14296253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 204 - 270
Target Start/End: Complemental strand, 18811770 - 18811704
Alignment:
Q  204 cggaatgaggactcgtgcccaaaagggtacctccaaagctacctcggcatataccgaatagttggtt 270  Q
    |||||||||||| ||||||||||||||  ||||||||||||||| | || |||| ||||||||||||    
T  18811770 cggaatgaggacccgtgcccaaaagggctcctccaaagctaccttgacagatacagaatagttggtt 18811704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 204 - 273
Target Start/End: Complemental strand, 8413882 - 8413813
Alignment:
Q  204 cggaatgaggactcgtgcccaaaagggtacctccaaagctacctcggcatataccgaatagttggttcaa 273  Q
    |||||||||||| ||||| |||||||||||||||||||||  |  | ||||||| |||||||||||||||    
T  8413882 cggaatgaggacccgtgctcaaaagggtacctccaaagctgtcctgccatatactgaatagttggttcaa 8413813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 74 - 139
Target Start/End: Original strand, 18143969 - 18144034
Alignment:
Q  74 aatctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaattt 139  Q
    ||||||| |||| ||||||||| ||||  |||||||||||||||| |||||||||| |||||||||    
T  18143969 aatctgataaacgtttgacaaaaacatgaaccattttgagttattaatagagtcagagaccaattt 18144034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 31092371 - 31092408
Alignment:
Q  204 cggaatgaggactcgtgcccaaaagggtacctccaaag 241  Q
    ||||||||||||||||||||||||||||||||||||||    
T  31092371 cggaatgaggactcgtgcccaaaagggtacctccaaag 31092408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 29166965 - 29167048
Alignment:
Q  74 aatctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaaga 157  Q
    |||||||||||| ||||||||| |||  ||||||||||||||||  |||||||| || || ||||||| |||||  ||||||||    
T  29166965 aatctgagaaacgtttgacaaaaacagagaccattttgagttatcaatagagtccggtactaatttgaaaatttgttacaaaga 29167048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 407
Target Start/End: Complemental strand, 8413795 - 8413749
Alignment:
Q  361 tgtttagctagtagcttctgtcatttctctgttgttgttcttttagc 407  Q
    |||| ||||||||||||||| ||||||||||||||| ||||||||||    
T  8413795 tgttaagctagtagcttctgccatttctctgttgttcttcttttagc 8413749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 204 - 272
Target Start/End: Original strand, 37344674 - 37344742
Alignment:
Q  204 cggaatgaggactcgtgcccaaaagggtacctccaaagctacctcggcatataccgaatagttggttca 272  Q
    ||||||||||| ||||||||||||||||| |||||||||  ||| | |||||||  |||||||| ||||    
T  37344674 cggaatgaggattcgtgcccaaaagggtatctccaaagccgccttgacatatacataatagttgattca 37344742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 157
Target Start/End: Original strand, 30786444 - 30786495
Alignment:
Q  106 attttgagttattcatagagtcagggaccaatttgagaatttagtacaaaga 157  Q
    ||||||||||||| ||||||||||||| |||||||| | ||| |||||||||    
T  30786444 attttgagttattaatagagtcagggatcaatttgaaagtttggtacaaaga 30786495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 3e-43; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 11 - 167
Target Start/End: Complemental strand, 46163990 - 46163834
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaacact-aatagagccagagacaaatctgagaaacatttgacaaagacattgaccattt 109  Q
    |||||||||||||||||||| |||||||||||||||||||||||| | ||||||| ||| ||  ||||||||||||||||||||||||||  ||||||||    
T  46163990 aatatccaaaagacattgagccattaacactcaaaatacaaaacaattaatagagtcag-gatcaatctgagaaacatttgacaaagacagggaccattt 46163892  T
Q  110 tgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaa 167  Q
    ||||||||| ||||||||  ||||||| |||||||||| ||||||||| |||||||||    
T  46163891 tgagttattaatagagtcgcggaccaaattgagaatttggtacaaagacagggaccaa 46163834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 11 - 171
Target Start/End: Complemental strand, 55214137 - 55213976
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaac-actaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattt 109  Q
    ||||||||||||||||||| ||||||||||||||||| |||||| |||||||||| | ||||| ||| |||||||| |||||||||||| ||||||||||    
T  55214137 aatatccaaaagacattgaatcattaacactcaaaatgcaaaaccactaatagagtcggagaccaatttgagaaacgtttgacaaagaccttgaccattt 55214038  T
Q  110 tgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 171  Q
    ||||||||| ||||| ||||  |||||||||| ||||| ||||||||| || ||| ||||||    
T  55214037 tgagttattaatagattcagataccaatttgaaaatttggtacaaagacagagactaatttg 55213976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 11 - 147
Target Start/End: Complemental strand, 32808321 - 32808183
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaaca-ctaatagagc-cagagacaaatctgagaaacatttgacaaagacattgaccatt 108  Q
    |||||||||||||||||||   ||||||||||||||||||||||| |||||||||  ||||||| ||| ||||||||||||||||||||||  || ||||    
T  32808321 aatatccaaaagacattgaactattaacactcaaaatacaaaacaactaatagaggtcagagaccaatttgagaaacatttgacaaagacagagatcatt 32808222  T
Q  109 ttgagttattcatagagtcagggaccaatttgagaattt 147  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  32808221 ttgagttattaatagagtcagggaccaatttgaaaattt 32808183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 11 - 179
Target Start/End: Original strand, 36012610 - 36012779
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaaca-ctaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattt 109  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||| ||||||    |||  || ||| |||||||| ||||| |||||||  ||||||||    
T  36012610 aatattcaaaagacattgagtcattaatactcaaaatacaaaacaactaataagatcaggaaccaatttgagaaacgtttgaaaaagacagggaccattt 36012709  T
Q  110 tgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgattta 179  Q
    ||||||||| |||||||||| || |||||||| ||||| ||||||||| || ||||||||| ||||||||    
T  36012710 tgagttattaatagagtcagagatcaatttgataatttggtacaaagacagagaccaatttagtgattta 36012779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 11 - 179
Target Start/End: Original strand, 45708637 - 45708806
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaaca-ctaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattt 109  Q
    |||||| |||||||||||||||||||||| ||||||||||||||| ||||| ||| ||||||| ||| |||| ||| |||||||||||||  | ||||||    
T  45708637 aatatctaaaagacattgagtcattaacagtcaaaatacaaaacaactaatcgagtcagagaccaatttgaggaacgtttgacaaagacagaggccattt 45708736  T
Q  110 tgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgattta 179  Q
    ||||||||| | | |||||| ||||||||| | | ||||||||||||| | ||||||||||  |||||||    
T  45708737 tgagttattaacatagtcagtgaccaatttaaaattttagtacaaagacatggaccaatttaatgattta 45708806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 55 - 179
Target Start/End: Original strand, 46164060 - 46164184
Alignment:
Q  55 actaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaa 154  Q
    |||||||||| ||| ||| ||| |||||||| |||||||||||||  ||||||||||||||||| |||||||||||||| |||||||||||||  |||||    
T  46164060 actaatagagtcagggaccaatatgagaaacgtttgacaaagacagagaccattttgagttattaatagagtcagggactaatttgagaatttgatacaa 46164159  T
Q  155 agatagggaccaatttggtgattta 179  Q
    ||| |||| ||||||||||| ||||    
T  46164160 agacagggtccaatttggtggttta 46164184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 74 - 179
Target Start/End: Original strand, 33140537 - 33140642
Alignment:
Q  74 aatctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggt 173  Q
    |||||||||||  ||||||||||||| |||||||||||||||||| |||||||||| || ||||||||| |||| ||||||||| | |||||||||| ||    
T  33140537 aatctgagaaatgtttgacaaagacagtgaccattttgagttattaatagagtcagagatcaatttgagcatttggtacaaagacaaggaccaatttagt 33140636  T
Q  174 gattta 179  Q
    ||||||    
T  33140637 gattta 33140642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 43 - 179
Target Start/End: Original strand, 43804116 - 43804253
Alignment:
Q  43 aaaatacaaaaca-ctaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttga 141  Q
    ||||||||||||| ||||||||  ||||||| |||||||||||||||||||||||||| |||||||||||| ||||| ||| ||| | |||||||||| |    
T  43804116 aaaatacaaaacaactaatagattcagagaccaatctgagaaacatttgacaaagacaatgaccattttgaattattaataaagttaaggaccaatttaa 43804215  T
Q  142 gaatttagtacaaagatagggaccaatttggtgattta 179  Q
     ||||| || |||||| |  |||||||||| |||||||    
T  43804216 aaatttggtgcaaagacaaagaccaatttgatgattta 43804253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 43 - 185
Target Start/End: Complemental strand, 26122091 - 26121948
Alignment:
Q  43 aaaatacaaaaca-ctaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttga 141  Q
    ||||||||||||| ||||||||| ||  ||| ||||| ||||||||||||||||||||   ||||||||| |||||| ||||||||| ||||||||||||    
T  26122091 aaaatacaaaacaactaatagagtcatggaccaatctaagaaacatttgacaaagacagataccattttgtgttattaatagagtcatggaccaatttga 26121992  T
Q  142 gaatttagtacaaagatagggaccaatttggtgatttaatcgat 185  Q
    |||||| ||| ||||| || ||||||| || | ||||| |||||    
T  26121991 gaatttggtataaagacagtgaccaatgtgataatttactcgat 26121948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 55 - 179
Target Start/End: Original strand, 32808394 - 32808520
Alignment:
Q  55 actaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattttgagttat--tcatagagtcagggaccaatttgagaatttagtac 152  Q
    |||||||||| ||| ||| |||||||||||| ||||||||||| |  ||||||||||||||||  | |||||| || |||||||||||| | ||| ||||    
T  32808394 actaatagagtcagggaccaatctgagaaacgtttgacaaagatagagaccattttgagttatcataatagagccaaggaccaatttgaaattttggtac 32808493  T
Q  153 aaagatagggaccaatttggtgattta 179  Q
    ||||| || ||||||||||||||||||    
T  32808494 aaagacagagaccaatttggtgattta 32808520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 2051637 - 2051504
Alignment:
Q  13 tatccaaaagacattgagtcattaacactcaaaatacaaaaca-ctaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattttg 111  Q
    |||| ||||| ||||||  ||||||| |||||||||||||||| ||||||||  ||  ||| ||| |||||||| ||||||||||| |  ||||||||||    
T  2051637 tatctaaaaggcattgaaccattaaccctcaaaatacaaaacaactaatagaaacaatgaccaatatgagaaacgtttgacaaagataaggaccattttg 2051538  T
Q  112 agttattcatagagtcagggaccaatttgagaat 145  Q
    ||||||| | |||||||| |||||||||||||||    
T  2051537 agttattaacagagtcagagaccaatttgagaat 2051504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 11 - 155
Target Start/End: Complemental strand, 12089161 - 12089016
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaac-actaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattt 109  Q
    ||||||||||||||||| |  ||||||||||||||||||||||| |||||||||| | | ||| ||||| | |||  ||||| ||| ||||  |||||||    
T  12089161 aatatccaaaagacatttaaccattaacactcaaaatacaaaacaactaatagagtcggggactaatctaaaaaaattttgataaatacatgaaccattt 12089062  T
Q  110 tgagttattcatagagtcagggaccaatttgagaatttagtacaaa 155  Q
    ||| ||||| ||| |||||||||||||||| | ||||| |||||||    
T  12089061 tgaattattaataaagtcagggaccaatttaaaaatttggtacaaa 12089016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 167
Target Start/End: Complemental strand, 3157832 - 3157676
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaacact-aatagagccagagacaaatctgagaaacatttgacaaagacattgaccattt 109  Q
    ||||||||||| |||||||  ||||||||||||||||| |||||| | ||||||| ||| |||  ||||||||||||||||||||||| |   |||||||    
T  3157832 aatatccaaaaaacattgaaccattaacactcaaaataaaaaacaattaatagagtcag-gaccgatctgagaaacatttgacaaagaaaagaaccattt 3157734  T
Q  110 tgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaa 167  Q
    | | ||||| ||||||| | |||| ||  ||||||||| ||||||||| | |||||||    
T  3157733 taaattattaatagagttatggacgaaactgagaatttggtacaaagacaaggaccaa 3157676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 43 - 184
Target Start/End: Complemental strand, 45708580 - 45708440
Alignment:
Q  43 aaaatacaaaaca-ctaatagagccagagacaaatctgagaaacatttgacaaagacattgacca-ttttgagttattcatagagtcagggaccaatttg 140  Q
    ||||||||||| | ||||||||| | ||||| |||||||||||| ||||||||||||||  | || |||||||||||| ||||||| || |||||||||     
T  45708580 aaaatacaaaagaactaatagagacggagaccaatctgagaaacgtttgacaaagacatgaatcatttttgagttattaatagagttagagaccaattta 45708481  T
Q  141 agaatttagtacaaagatagggaccaatttggtgatttaatcga 184  Q
    | ||||| ||||   |||| ||||||||||||||||||| ||||    
T  45708480 aaaatttggtac---gataaggaccaatttggtgatttactcga 45708440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 43 - 170
Target Start/End: Complemental strand, 26244301 - 26244173
Alignment:
Q  43 aaaatacaaaaca-ctaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttga 141  Q
    ||||||||||||| ||||||||| ||  ||| ||||||||||||||| ||||||||||  |||||||||| |||||| ||||||||| ||| |||||| |    
T  26244301 aaaatacaaaacaactaatagagtcaaggaccaatctgagaaacattggacaaagacagagaccattttgtgttattaatagagtcatggatcaatttaa 26244202  T
Q  142 gaatttagtacaaagatagggaccaattt 170  Q
     |||||  |||||||| ||  ||||||||    
T  26244201 aaatttgttacaaagacagtaaccaattt 26244173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 204 - 273
Target Start/End: Original strand, 16893132 - 16893201
Alignment:
Q  204 cggaatgaggactcgtgcccaaaagggtacctccaaagctacctcggcatataccgaatagttggttcaa 273  Q
    |||||||||||| ||||| ||||||||| ||||||||||| ||| | |||||||||||||||||||||||    
T  16893132 cggaatgaggacccgtgctcaaaagggtgcctccaaagctgccttgccatataccgaatagttggttcaa 16893201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 43 - 170
Target Start/End: Complemental strand, 26244998 - 26244870
Alignment:
Q  43 aaaatacaaaacact-aatagagccagagacaaatctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttga 141  Q
    ||||||||||||| | ||||||| ||  ||| ||||||| ||| ||||||||||||||  ||||||||||  ||||| ||||||||| |||||||||| |    
T  26244998 aaaatacaaaacaattaatagagtcactgaccaatctgataaatatttgacaaagacagagaccattttgttttattaatagagtcatggaccaatttaa 26244899  T
Q  142 gaatttagtacaaagatagggaccaattt 170  Q
     ||||| ||||||||| |  |||||||||    
T  26244898 aaatttggtacaaagacactgaccaattt 26244870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 167
Target Start/End: Complemental strand, 33140448 - 33140291
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaa-cactaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattt 109  Q
    ||||||||||||||||| || ||||||||||||||||||||||  ||||||| ||     ||| ||| ||| |||  |||||||||||||   | |||||    
T  33140448 aatatccaaaagacattaagacattaacactcaaaatacaaaataactaataaagttgatgaccaatttgaaaaatgtttgacaaagacaaaaatcattt 33140349  T
Q  110 tgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaa 167  Q
    ||||||||| ||||||||||  || ||||| |||||||  |||||||| | |||||||    
T  33140348 tgagttattaatagagtcagaaactaatttaagaatttgatacaaagacatggaccaa 33140291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 359 - 431
Target Start/End: Original strand, 16893217 - 16893289
Alignment:
Q  359 ggtgtttagctagtagcttctgtcatttctctgttgttgttcttttagccattgctttgttagtttaattcat 431  Q
    |||||| ||||||||||||||| ||||||||||||||| ||||||||||  || | ||||||||||| |||||    
T  16893217 ggtgttaagctagtagcttctgccatttctctgttgttcttcttttagcagtttcattgttagtttatttcat 16893289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 168
Target Start/End: Original strand, 7565744 - 7565832
Alignment:
Q  80 agaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaat 168  Q
    |||||| ||||||||||| || ||||||||||||||||| ||| ||||   |||||| |||||||||| ||||| |||||  |||||||    
T  7565744 agaaacgtttgacaaagagatggaccattttgagttattaataaagtcgtagaccaaattgagaatttggtacagagataaagaccaat 7565832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 26122149 - 26122193
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaaca 55  Q
    |||||||||||||||||||||||||| |||||||||||| |||||    
T  26122149 aatatccaaaagacattgagtcattaccactcaaaataccaaaca 26122193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 372 - 431
Target Start/End: Original strand, 24347280 - 24347339
Alignment:
Q  372 tagcttctgtcatttctctgttgttgttcttttagccattgctttgttagtttaattcat 431  Q
    ||||||||  |||||  |||||||||||||||||||  ||||||||||||||||||||||    
T  24347280 tagcttctaccattttcctgttgttgttcttttagcggttgctttgttagtttaattcat 24347339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 26245055 - 26245174
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaac-actaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattt 109  Q
    ||||| |||||||||||||||||||| || ||||||||| |||| | || |||||  || ||| ||||| | |||| ||| ||||||||||  | |||||    
T  26245055 aatattcaaaagacattgagtcattaccattcaaaatacgaaacaattattagagttagggaccaatctaaaaaacctttaacaaagacataaatcattt 26245154  T
Q  110 tgagttattcatagagtcag 129  Q
    ||||||||| ||| ||||||    
T  26245155 tgagttattaataaagtcag 26245174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 156
Target Start/End: Original strand, 43031390 - 43031464
Alignment:
Q  82 aaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaag 156  Q
    |||||||||||||||||| ||| |||||| ||||||| ||||| ||||  |||||||| |||||||  |||||||    
T  43031390 aaacatttgacaaagacaatgatcattttaagttattaatagaatcagaaaccaatttaagaatttgatacaaag 43031464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 78 - 171
Target Start/End: Complemental strand, 39840740 - 39840647
Alignment:
Q  78 tgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 171  Q
    |||||||| ||||||||| ||| |||| |||||||  |||| |||||||||| ||| |||||||||||    |||||||| ||||| |||||||    
T  39840740 tgagaaacttttgacaaaaacaatgactattttgaaatattaatagagtcagagactaatttgagaatcacttacaaagacagggatcaatttg 39840647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 147
Target Start/End: Complemental strand, 7565692 - 7565626
Alignment:
Q  80 agaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaattt 147  Q
    |||||| ||||||||||| |   | |||||||||||||| |||||||| |||||||||||||||||||    
T  7565692 agaaacgtttgacaaagatagatatcattttgagttattaatagagtc-gggaccaatttgagaattt 7565626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 247
Target Start/End: Original strand, 51524922 - 51524965
Alignment:
Q  204 cggaatgaggactcgtgcccaaaagggtacctccaaagctacct 247  Q
    |||||||||||| ||||||||||||||  |||||||||||||||    
T  51524922 cggaatgaggacccgtgcccaaaagggctcctccaaagctacct 51524965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 171
Target Start/End: Complemental strand, 48338392 - 48338299
Alignment:
Q  78 tgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 171  Q
    |||||||| |||||||||||||| ||| |||||||  |||| |||||||||  ||| ||||| |||||    ||||||||||| ||| ||||||    
T  48338392 tgagaaacttttgacaaagacatggactattttgaagtattaatagagtcaatgactaatttaagaatcatttacaaagatagagactaatttg 48338299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 3e-43; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 11 - 139
Target Start/End: Original strand, 27134049 - 27134178
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaaca-ctaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattt 109  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||  |||||||    
T  27134049 aatatccaaaatacattgagtcattaacactcaaaatacaaaacaactaatagagtcagagaccaatctgagaaacatttgacaaagacatgaaccattt 27134148  T
Q  110 tgagttattcatagagtcagggaccaattt 139  Q
    ||||||||| |||||||||  |||||||||    
T  27134149 tgagttattaatagagtcaaagaccaattt 27134178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 11 - 171
Target Start/End: Complemental strand, 49784691 - 49784532
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaaca-ctaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattt 109  Q
    ||||| ||||| |||||||  ||| |||||||||||||||||||| ||||| ||| ||| ||| ||||||||||||| |||||||||||||  |||||||    
T  49784691 aatattcaaaacacattgaaccatcaacactcaaaatacaaaacaactaattgagtcagggaccaatctgagaaacacttgacaaagacat--accattt 49784594  T
Q  110 tgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 171  Q
    ||||||||| |||||||||||||| || |||| ||||||||||||||| |||||| ||||||    
T  49784593 tgagttattaatagagtcagggactaaattgaaaatttagtacaaagacagggactaatttg 49784532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 11 - 179
Target Start/End: Original strand, 4067076 - 4067243
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaac-actaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattt 109  Q
    |||||||||||||||||||| ||||||||||||||||| ||||| | ||| |||| ||  ||| |||||||||||||||||||||||||  |||||||||    
T  4067076 aatatccaaaagacattgagccattaacactcaaaataaaaaacaattaacagagtcatggaccaatctgagaaacatttgacaaagac-gtgaccattt 4067174  T
Q  110 tgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgattta 179  Q
    ||||||||| |||||||||  ||||||||| | ||||| |||||||||  |||| ||||||| |||||||    
T  4067175 tgagttattaatagagtcaatgaccaatttaaaaatttggtacaaaga-ggggatcaatttgatgattta 4067243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 204 - 341
Target Start/End: Complemental strand, 49491945 - 49491809
Alignment:
Q  204 cggaatgaggactcgtgcccaaaagggtacctccaaagctacctcggcatataccgaatagttggttcaatggtaaaacaatacatgggaagtgttattt 303  Q
    |||||||||||| ||||||||||||||||||||||||| | ||| ||| |||||||||||||||||||||| ||||||  ||||||||||||||||||||    
T  49491945 cggaatgaggacccgtgcccaaaagggtacctccaaagttgccttggcgtataccgaatagttggttcaattgtaaaa-gatacatgggaagtgttattt 49491847  T
Q  304 gtaacatattgttcagacaacaagacctgttctatgat 341  Q
    | ||||| |||||| | ||||||||  |||||| ||||    
T  49491846 gcaacatcttgttctggcaacaagatatgttctttgat 49491809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 11 - 171
Target Start/End: Original strand, 34535486 - 34535652
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaaca------ctaatagagccagagacaaatctgagaaacatttgacaaagacattgac 104  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||      ||||||||| ||| ||| |||||||||||||| ||| ||||| |   |     
T  34535486 aatattcaaaagacattgagccattaacactcaaaatacaaaacaactaaactaatagagtcagcgaccaatctgagaaacatatgataaagataagaat 34535585  T
Q  105 cattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 171  Q
    |||||||||||||| ||| ||||||||||||| |||| ||||||||||||| | |||||||||||||    
T  34535586 cattttgagttattaataaagtcagggaccaaattgaaaatttagtacaaatagagggaccaatttg 34535652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 78 - 170
Target Start/End: Complemental strand, 27133923 - 27133831
Alignment:
Q  78 tgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaattt 170  Q
    |||||||| |||||||||||||| ||||||||||||||||| ||| ||||||||| |||||| ||||||| ||||||||| ||||||||||||    
T  27133923 tgagaaacgtttgacaaagacatagaccattttgagttattaataaagtcagggatcaatttaagaatttggtacaaagacagggaccaattt 27133831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 157
Target Start/End: Complemental strand, 38208428 - 38208281
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaacact-aatagagccagagacaaatctgagaaacatttgacaaagacattgaccattt 109  Q
    ||||||||| ||||||||||||||| ||||||||||||||||| | | ||||| | ||  ||| ||||||||||| |||||||||||| ||  |||||||    
T  38208428 aatatccaagagacattgagtcatttacactcaaaatacaaaataattaatagtgtcaatgaccaatctgagaaatatttgacaaagatataaaccattt 38208329  T
Q  110 tgagttattcatagagtcagggaccaatttgagaatttagtacaaaga 157  Q
    ||||||||  |||||||||| |||||| || | ||||||||| |||||    
T  38208328 tgagttatcaatagagtcagagaccaaattaaaaatttagtataaaga 38208281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 171
Target Start/End: Complemental strand, 23329460 - 23329307
Alignment:
Q  19 aaagacattgagtcattaacactcaaaatacaaaaca-ctaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattttgagttat 117  Q
    |||||||||||   ||||||||| ||||||||||||| |||||| ||  |||||| |||||||| ||| ||||||||| |||  |||||||| ||| |||    
T  23329460 aaagacattgaactattaacactaaaaatacaaaacaactaataaagttagagaccaatctgagtaacgtttgacaaacacagagaccatttcgaggtat 23329361  T
Q  118 tcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 171  Q
    | ||||||||||| ||||| ||||||||||  |||||||||| | |||||||||    
T  23329360 taatagagtcaggaaccaaattgagaatttgatacaaagataagaaccaatttg 23329307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 11 - 155
Target Start/End: Original strand, 33321232 - 33321377
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaac-actaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattt 109  Q
    ||||||||||||||| |||||||||| ||||||||||||||||| | |||||||| ||  ||| ||| ||| |||  |||||||||||| | ||| ||||    
T  33321232 aatatccaaaagacaatgagtcattatcactcaaaatacaaaacaaataatagagacaatgaccaatttgaaaaaagtttgacaaagacgtggactattt 33321331  T
Q  110 tgagttattcatagagtcagggaccaatttgagaatttagtacaaa 155  Q
    ||||||||| ||||||||||  |||||||| | ||||| |||||||    
T  33321332 tgagttattaatagagtcagaaaccaatttaaaaatttggtacaaa 33321377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 50 - 179
Target Start/End: Original strand, 49784757 - 49784889
Alignment:
Q  50 aaaacactaatagagccagagacaaatctgagaaacatttgacaaaga---cattgaccattttgagttattcatagagtcagggaccaatttgagaatt 146  Q
    |||| |||||||||| ||||||| |||||||||||||||||| ||| |   ||| |   ||||||||||||| |||||||||||||||||| |||||| |    
T  49784757 aaaaaactaatagagtcagagaccaatctgagaaacatttgataaaaaaaacatggctaattttgagttattaatagagtcagggaccaatatgagaact 49784856  T
Q  147 tagtacaaagatagggaccaatttggtgattta 179  Q
    | ||||||||| | |||||||||||||| ||||    
T  49784857 tggtacaaagacatggaccaatttggtggttta 49784889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 4066990 - 4066923
Alignment:
Q  74 aatctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttga 141  Q
    |||||||||||| ||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||    
T  4066990 aatctgagaaacttttgacaaagacagtgaccattttgaattattaatagagtcagggaccaatttga 4066923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 77 - 186
Target Start/End: Complemental strand, 2464159 - 2464050
Alignment:
Q  77 ctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgat 176  Q
    ||||||||| ||||||||||||||    |||||||||||||| || ||||| |||||||| || | ||||||||||||||||| ||||||||||| || |    
T  2464159 ctgagaaacgtttgacaaagacatgagtcattttgagttattaatggagtctgggaccaaattaaaaatttagtacaaagatatggaccaatttgatggt 2464060  T
Q  177 ttaatcgata 186  Q
    ||| ||||||    
T  2464059 ttactcgata 2464050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 55 - 172
Target Start/End: Complemental strand, 34535416 - 34535299
Alignment:
Q  55 actaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaa 154  Q
    ||||||| || ||| ||| ||| |||||||| |||||||||  || |||||||||| ||||||| ||||||||| |||| ||||||| ||||| ||||||    
T  34535416 actaatacagtcagggaccaatttgagaaacgtttgacaaattcagtgaccattttaagttattaatagagtcaaggactaatttgaaaatttggtacaa 34535317  T
Q  155 agatagggaccaatttgg 172  Q
    | | ||||||||||||||    
T  34535316 aaacagggaccaatttgg 34535299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 351 - 429
Target Start/End: Complemental strand, 34566180 - 34566102
Alignment:
Q  351 tgaactttggtgtttagctagtagcttctgtcatttctctgttgttgttcttttagccattgctttgttagtttaattc 429  Q
    ||||| ||||||||||| ||||||||| |||||||||| || ||||||||||||| |  ||||||||||||||||||||    
T  34566180 tgaaccttggtgtttagatagtagcttatgtcatttctttggtgttgttcttttatcagttgctttgttagtttaattc 34566102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 207 - 337
Target Start/End: Complemental strand, 50903544 - 50903410
Alignment:
Q  207 aatgaggactcgtgcccaaaagggtacctccaaagctacctcggcatataccgaatagttggttcaatggtaaaacaatacat----gggaagtgttatt 302  Q
    ||||||||| ||||||||||  ||||||||||||||   || |||||||||||| |||||||||| || | || | |||| ||    |||||||||||||    
T  50903544 aatgaggacccgtgcccaaagcggtacctccaaagccgacttggcatataccgattagttggttccattgcaagagaatatatatatgggaagtgttatt 50903445  T
Q  303 tgtaacatattgttcagacaacaagacctgttcta 337  Q
    || ||||| |||||||| |||||||| ||||||||    
T  50903444 tgcaacatcttgttcaggcaacaagatctgttcta 50903410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 120 - 179
Target Start/End: Original strand, 38208524 - 38208583
Alignment:
Q  120 atagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgattta 179  Q
    |||||||||||||||||||||||||||| ||||||||| || ||||||||||||| ||||    
T  38208524 atagagtcagggaccaatttgagaatttggtacaaagacagagaccaatttggtggttta 38208583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 93 - 155
Target Start/End: Original strand, 2464189 - 2464251
Alignment:
Q  93 aaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaa 155  Q
    ||||||| |||| ||||||||||||| ||||||||| |||||||||||||||||| |||||||    
T  2464189 aaagacaatgactattttgagttattaatagagtcatggaccaatttgagaatttggtacaaa 2464251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 78 - 179
Target Start/End: Complemental strand, 20993958 - 20993857
Alignment:
Q  78 tgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgatt 177  Q
    |||||||||||||||||||||    || ||||||||||||| ||||| ||| ||||||| ||||||||||  || ||| |||| || ||||||| |||||    
T  20993958 tgagaaacatttgacaaagacggaaactattttgagttattaatagaatcatggaccaagttgagaattttatataaaaatagagatcaatttgatgatt 20993859  T
Q  178 ta 179  Q
    ||    
T  20993858 ta 20993857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 431
Target Start/End: Complemental strand, 49491760 - 49491688
Alignment:
Q  359 ggtgtttagctagtagcttctgtcatttctctgttgttgttcttttagccattgctttgttagtttaattcat 431  Q
    |||||||||  ||||||||||| |||||| | |||||||||||||||||   |||||||||| ||||||||||    
T  49491760 ggtgtttagtcagtagcttctgccatttccccgttgttgttcttttagcagctgctttgttattttaattcat 49491688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 270
Target Start/End: Complemental strand, 41035090 - 41035024
Alignment:
Q  204 cggaatgaggactcgtgcccaaaagggtacctccaaagctacctcggcatataccgaatagttggtt 270  Q
    |||||||||||| ||||||||||| ||  ||||||||||||||| |||| || | ||||||||||||    
T  41035090 cggaatgaggacccgtgcccaaaaaggctcctccaaagctaccttggcaaattctgaatagttggtt 41035024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 431
Target Start/End: Complemental strand, 50903357 - 50903288
Alignment:
Q  359 ggtgtttagctagtagcttctgtcatttctctgttgttgttcttttagccattgctttgttagtttaattcat 431  Q
    |||||||||||||||||||||| | |||||   ||||||||||||||||  ||| |||||||||||| |||||    
T  50903357 ggtgtttagctagtagcttctgccttttct---ttgttgttcttttagcagttgttttgttagtttatttcat 50903288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 78 - 171
Target Start/End: Original strand, 7481186 - 7481279
Alignment:
Q  78 tgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 171  Q
    |||||||| ||||||||||| |  ||||||||| ||||||| ||||||||   ||||| |||||||||||  |||||| | || ||||||||||    
T  7481186 tgagaaacgtttgacaaagatagagaccattttaagttattaatagagtcgaagaccagtttgagaatttgttacaaatacagagaccaatttg 7481279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 270
Target Start/End: Original strand, 3374358 - 3374424
Alignment:
Q  204 cggaatgaggactcgtgcccaaaagggtacctccaaagctacctcggcatataccgaatagttggtt 270  Q
    ||||||||||||  ||||||||||||||| |||||||||| ||| || |  ||| ||||||||||||    
T  3374358 cggaatgaggacatgtgcccaaaagggtagctccaaagctgccttggaagctacagaatagttggtt 3374424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 14344109 - 14344147
Alignment:
Q  203 tcggaatgaggactcgtgcccaaaagggtacctccaaag 241  Q
    ||||||||| |||||||| ||||||||||||||||||||    
T  14344109 tcggaatgatgactcgtgtccaaaagggtacctccaaag 14344147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 171
Target Start/End: Complemental strand, 7481134 - 7481046
Alignment:
Q  82 aaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 171  Q
    |||| |||||||| |||| |||| ||||| | ||||| ||||||| ||| ||||| || ||||||| |||||||||||| ||| ||||||    
T  7481134 aaacgtttgacaatgacagtgacgattttaaattattaatagagttagg-accaaattaagaatttggtacaaagatagtgactaatttg 7481046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 146
Target Start/End: Complemental strand, 33321175 - 33321071
Alignment:
Q  43 aaaatacaaaaca-ctaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttga 141  Q
    ||||||||||||| ||||||||| | | ||  ||| | |||||  |||||||||||||  || |||||| | ||||| |||||||||  |||||||||||    
T  33321175 aaaatacaaaacaactaatagagtcggggatcaatataagaaatgtttgacaaagacagagatcattttaaattattaatagagtcaatgaccaatttga 33321076  T
Q  142 gaatt 146  Q
    |||||    
T  33321075 gaatt 33321071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 6e-29; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 11 - 179
Target Start/End: Original strand, 67536 - 67705
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaaca-ctaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattt 109  Q
    |||||||||||| ||||||   ||||||||| ||||||||||||| ||||||||| ||| ||| ||||||| |||| | ||||||||||   ||| ||||    
T  67536 aatatccaaaaggcattgatcaattaacactgaaaatacaaaacaactaatagagtcagggaccaatctgaaaaacgtatgacaaagacggagactattt 67635  T
Q  110 tgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgattta 179  Q
    ||||||||| ||| | |||| ||||||||||| ||||| |||||||||  |||||||||||| |||||||    
T  67636 tgagttattaataaaatcagagaccaatttgaaaatttggtacaaagactgggaccaatttgatgattta 67705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 11 - 171
Target Start/End: Complemental strand, 16434975 - 16434815
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaac-actaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattt 109  Q
    ||||||||||| ||||||||  |||||||||||||||||||||| ||||||| || ||  ||| |||||||||||  |||||||||||||   |||||||    
T  16434975 aatatccaaaatacattgagctattaacactcaaaatacaaaacaactaataaagtcaaggaccaatctgagaaatttttgacaaagacagataccattt 16434876  T
Q  110 tgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 171  Q
    | ||||||| |||||||||  ||||||||||||||||| ||||||||| || ||| ||||||    
T  16434875 ttagttattaatagagtca-tgaccaatttgagaatttggtacaaagagagagactaatttg 16434815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 74 - 179
Target Start/End: Complemental strand, 67447 - 67342
Alignment:
Q  74 aatctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggt 173  Q
    |||||||||||  ||||| ||| |||  ||||||||| ||||||| ||| |||||||||||||||||||||||| ||||||||| | |||||||||||||    
T  67447 aatctgagaaatgtttgataaaaacagggaccattttaagttattaatatagtcagggaccaatttgagaatttggtacaaagacatggaccaatttggt 67348  T
Q  174 gattta 179  Q
    ||||||    
T  67347 gattta 67342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 43 - 157
Target Start/End: Complemental strand, 10388358 - 10388243
Alignment:
Q  43 aaaatacaaaacac-taatagagccagagacaaatctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttga 141  Q
    |||||||||||||| |||||||| ||||||| ||| |||||||||||| |||||||||  ||||||||||||||||| |||||||||| ||||| ||| |    
T  10388358 aaaatacaaaacacctaatagagtcagagaccaatatgagaaacatttaacaaagacagagaccattttgagttattaatagagtcagagaccagtttaa 10388259  T
Q  142 gaatttagtacaaaga 157  Q
     ||||| ||| |||||    
T  10388258 aaatttggtataaaga 10388243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 11 - 170
Target Start/End: Original strand, 10388415 - 10388577
Alignment:
Q  11 aatatccaaaagacattgagtcattaacactcaaaatacaaaac-acta--atagagccagagacaaatctgagaaacatttgacaaagacattgaccat 107  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||  |||||| | | ||   || | |||||||| |||||||||||| || |||    
T  10388415 aatatccaaaagacattgagtcattaatactcaaaatacaaaacaactaatatagagtccgggatcgatataagaaacatctgacaaagacatggatcat 10388514  T
Q  108 tttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaattt 170  Q
    ||||| ||||| ||||||| ||  |||||||||||||| | |||||||||  | |||||||||    
T  10388515 tttgatttattaatagagttagaaaccaatttgagaatatggtacaaagacggagaccaattt 10388577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 82 - 170
Target Start/End: Original strand, 30122812 - 30122900
Alignment:
Q  82 aaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaattt 170  Q
    ||||||||||||||||||  ||||||||||||||||| ||| ||| ||||||||||||||||||||  |||||||| ||| ||||||||    
T  30122812 aaacatttgacaaagacagagaccattttgagttattaataaagttagggaccaatttgagaatttgatacaaagacaggaaccaattt 30122900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 77 - 157
Target Start/End: Original strand, 6714521 - 6714601
Alignment:
Q  77 ctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaaga 157  Q
    |||||||| | ||||||||||||  ||||||||||| ||||| ||| |||||| ||||||||||||||||| |||||||||    
T  6714521 ctgagaaataattgacaaagacaaagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaaga 6714601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 103 - 171
Target Start/End: Complemental strand, 6169450 - 6169382
Alignment:
Q  103 accattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 171  Q
    |||||||||||||||| ||| |||||  |||||| |||||||||||||| |||||||| ||||||||||    
T  6169450 accattttgagttattaataaagtcattgaccaaattgagaatttagtataaagatagagaccaatttg 6169382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 43 - 170
Target Start/End: Complemental strand, 30847764 - 30847636
Alignment:
Q  43 aaaatacaaaaca-ctaatagagccagagacaaatctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttga 141  Q
    ||||||||||||| |||||||||  |||||| |||||||||||| ||||||||||| |  ||||||||| | ||||| ||||| |||  ||||||||  |    
T  30847764 aaaatacaaaacaactaatagagttagagaccaatctgagaaacgtttgacaaagatagggaccattttaaattattaatagaatcatagaccaattcaa 30847665  T
Q  142 gaatttagtacaaagatagggaccaattt 170  Q
    |||||| ||| ||||| |  |||||||||    
T  30847664 gaatttggtataaagacatagaccaattt 30847636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 204 - 274
Target Start/End: Original strand, 25167898 - 25167968
Alignment:
Q  204 cggaatgaggactcgtgcccaaaagggtacctccaaagctacctcggcatataccgaatagttggttcaat 274  Q
    ||||| |||||||| ||||||||||||||||||||||||  ||| | || |||| ||||||||||||||||    
T  25167898 cggaaagaggactcatgcccaaaagggtacctccaaagccgccttgacagatacagaatagttggttcaat 25167968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 181
Target Start/End: Complemental strand, 3687735 - 3687625
Alignment:
Q  74 aatctgagaaacatttgacaaagacattgaccatttt---gagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaattt 170  Q
    |||||||||||| |||||||||||||   | ||||||   |||||||| | ||||||| ||| ||||||||||||||  |||||||| || |||||||||    
T  3687735 aatctgagaaacgtttgacaaagacaaataacatttttttgagttattaacagagtcatggatcaatttgagaatttgatacaaagacagagaccaattt 3687636  T
Q  171 ggtgatttaat 181  Q
      |||||||||    
T  3687635 aatgatttaat 3687625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 74 - 139
Target Start/End: Original strand, 3687853 - 3687918
Alignment:
Q  74 aatctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaattt 139  Q
    |||||||||||| ||||||||| |||  ||||||||||||||| | ||| | ||||||||||||||    
T  3687853 aatctgagaaacgtttgacaaaaacagagaccattttgagttactaataaactcagggaccaattt 3687918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 274
Target Start/End: Complemental strand, 4263434 - 4263364
Alignment:
Q  204 cggaatgaggactcgtgcccaaaagggtacctccaaagctacctcggcatataccgaatagttggttcaat 274  Q
    |||||||||||| ||||| ||||||||| ||||||||  |  || |||| |||| ||||||||||||||||    
T  4263434 cggaatgaggacccgtgctcaaaagggttcctccaaaattgtcttggcagatacggaatagttggttcaat 4263364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 169
Target Start/End: Original strand, 3605243 - 3605292
Alignment:
Q  120 atagagtcagggaccaatttgagaatttagtacaaagatagggaccaatt 169  Q
    |||||||||| ||||||||| | || |||||||||||| |||||||||||    
T  3605243 atagagtcagagaccaatttaaaaacttagtacaaagacagggaccaatt 3605292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 10990082 - 10990118
Alignment:
Q  207 aatgaggactcgtgcccaaaagggtacctccaaagct 243  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  10990082 aatgaggactcgtgcacaaaagggttcctccaaagct 10990118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0753 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0753
Description:

Target: scaffold0753; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 382 - 429
Target Start/End: Complemental strand, 5327 - 5280
Alignment:
Q  382 catttctctgttgttgttcttttagccattgctttgttagtttaattc 429  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||    
T  5327 catttccctgttgttgttcttttagcaattgctttgttagtttaattc 5280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 179
Target Start/End: Original strand, 122548 - 122640
Alignment:
Q  87 tttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgattta 179  Q
    |||||||||||||  ||| | |||||  |||| |||||||||| ||| |||||||||||||  |||||||| ||||||||| |||||| ||||    
T  122548 tttgacaaagacaaagactagtttgaaatattaatagagtcagagactaatttgagaatttcttacaaagacagggaccaacttggtgcttta 122640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 170
Target Start/End: Original strand, 8705 - 8769
Alignment:
Q  106 attttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaattt 170  Q
    ||||||||||||| ||||||| |||| |||| ||||||| ||| || |||||||| |||||||||    
T  8705 attttgagttattaatagagttagggtccaaattgagaacttaatataaagatagagaccaattt 8769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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