View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20019_low_8 (Length: 468)

Name: NF20019_low_8
Description: NF20019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20019_low_8
NF20019_low_8
[»] chr8 (30 HSPs)
chr8 (59-455)||(19344943-19345339)
chr8 (59-455)||(19504004-19504400)
chr8 (63-455)||(19390365-19390749)
chr8 (76-455)||(19337227-19337606)
chr8 (76-455)||(19355247-19355626)
chr8 (151-453)||(19376393-19376695)
chr8 (130-450)||(19172833-19173153)
chr8 (130-455)||(19287488-19287813)
chr8 (118-403)||(19404574-19404859)
chr8 (61-308)||(19410701-19410948)
chr8 (61-308)||(19457720-19457967)
chr8 (61-308)||(19523111-19523358)
chr8 (61-308)||(19469476-19469723)
chr8 (61-308)||(19540400-19540647)
chr8 (61-308)||(19592051-19592298)
chr8 (127-316)||(19468606-19468795)
chr8 (127-316)||(19555527-19555716)
chr8 (341-455)||(19469729-19469843)
chr8 (341-455)||(19540653-19540767)
chr8 (341-455)||(19591931-19592045)
chr8 (152-276)||(19370913-19371037)
chr8 (341-432)||(19468793-19468884)
chr8 (341-432)||(19555714-19555805)
chr8 (152-276)||(19341133-19341257)
chr8 (341-432)||(19410604-19410695)
chr8 (322-453)||(19448290-19448421)
chr8 (341-432)||(19457623-19457714)
chr8 (341-432)||(19523364-19523455)
chr8 (322-453)||(19532655-19532786)
chr8 (12-48)||(19404926-19404962)
[»] chr1 (1 HSPs)
chr1 (12-455)||(36314548-36314994)
[»] chr6 (2 HSPs)
chr6 (155-435)||(19542860-19543140)
chr6 (11-48)||(19543244-19543281)


Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 59 - 455
Target Start/End: Complemental strand, 19345339 - 19344943
Alignment:
Q  59 tctccatcaccacctactaacctccccttcgaggttaggtaccatttcataaactttccatctttaactttgaaagagaaagactcttcagtcttgttag 158  Q
    |||||||||  ||||||||||||||| ||||||||||| | ||||     |||||| ||||||||||||| ||||| |||||| |||||| |||||||||    
T  19345339 tctccatcatgacctactaacctcccgttcgaggttagttgccatcgtgcaaacttcccatctttaacttcgaaagcgaaagaatcttcattcttgttag 19345240  T
Q  159 agacaataatgtactgatacatatgttgaacatttgcgggaatgttctcgaatattccattgcttttaagttttccacttttccaatacactatgccgcg 258  Q
    ||||||||||||||||||| ||| ||||||| || | ||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||     
T  19345239 agacaataatgtactgatatatacgttgaactttcgtgggaatgttctcgaatattccattgctattaagttttccgcttttccaatacgctatgccgct 19345140  T
Q  259 tttcttgatgttcaattcaccttgttttggttcccattcaagactaaattcacctgaatttattagcgaatcagtcaacctcgaaaccaatgaccaatta 358  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||  |||||||  ||||| ||  ||||||||||||||||||    
T  19345139 tttcttgatgttcaattcaccttcttttggttcccattcaagactaaattcacctggagttggtagcgaaggagtcatccatgaaaccaatgaccaatta 19345040  T
Q  359 tgtcctgtttttcgattaactcccaacttcatcgttgggatcaaactgtaatcgggataatcaaaactctgccataataaactctttgtcccatttg 455  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  19345039 tgtccagtttttcgattaactcccaacttcatcgttgggatcaaagtgtgatcgggataatcaaaactctgccataataaactatttgtcccatttg 19344943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 59 - 455
Target Start/End: Original strand, 19504004 - 19504400
Alignment:
Q  59 tctccatcaccacctactaacctccccttcgaggttaggtaccatttcataaactttccatctttaactttgaaagagaaagactcttcagtcttgttag 158  Q
    |||||||||  ||||||||||||||||||||||||||| | ||||     |||||| ||||||||||||| ||||| |||||| |||||| |||||||||    
T  19504004 tctccatcatgacctactaacctccccttcgaggttagttgccatcgtgcaaacttcccatctttaacttcgaaagcgaaagaatcttcattcttgttag 19504103  T
Q  159 agacaataatgtactgatacatatgttgaacatttgcgggaatgttctcgaatattccattgcttttaagttttccacttttccaatacactatgccgcg 258  Q
    ||||||||||||||||||| ||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||     
T  19504104 agacaataatgtactgatatatacgttgaacttttgtgggaatgttctcgaatattccattgcttttaagttttccgcttttccaatgcactttgccgct 19504203  T
Q  259 tttcttgatgttcaattcaccttgttttggttcccattcaagactaaattcacctgaatttattagcgaatcagtcaacctcgaaaccaatgaccaatta 358  Q
    |||| | ||||||||||||| || ||||||||||||| |||||||||||| ||||| | ||  |||||||  ||||||||  ||||||||||||||||||    
T  19504204 tttccttatgttcaattcacgttcttttggttcccatacaagactaaatttacctggagttggtagcgaaggagtcaaccatgaaaccaatgaccaatta 19504303  T
Q  359 tgtcctgtttttcgattaactcccaacttcatcgttgggatcaaactgtaatcgggataatcaaaactctgccataataaactctttgtcccatttg 455  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||    ||||||||||||||||||||||||| |||||||||||||||||    
T  19504304 tgtcctgtttttcgattaactcccaacttcatcgttgagatcaaaatgtatgttggataatcaaaactctgccataatatactctttgtcccatttg 19504400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 63 - 455
Target Start/End: Complemental strand, 19390749 - 19390365
Alignment:
Q  63 catcaccacctactaacctccccttcgaggttaggtaccatttcataaactttccatctttaactttgaaagagaaagactcttcagtcttgttagagac 162  Q
    ||||| ||| || |||||||||||||||||| | | |||||   |||||||| ||||||||||||| |||||  ||||| ||||||  ||||||||||||    
T  19390749 catcagcacttattaacctccccttcgaggtaatgaaccatcgtataaacttcccatctttaacttcgaaagcaaaagaatcttcatccttgttagagac 19390650  T
Q  163 aataatgtactgatacatatgttgaacatttgcgggaatgttctcgaatattccattgcttttaagttttccacttttccaatacactatgccgcgtttc 262  Q
    ||||||||| ||||| ||| ||||||||||  | ||||||||||||||||  |||||||||||||||||||| ||||||||||||||| |||||||||||    
T  19390649 aataatgtattgatatatacgttgaacattcaccggaatgttctcgaataaaccattgcttttaagttttccgcttttccaatacactttgccgcgtttc 19390550  T
Q  263 ttgatgttcaattcaccttgttttggttcccattcaagactaaattcacctgaatttattagcgaatcagtcaacctcgaaaccaatgaccaattatgtc 362  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||  |||||||  || |        ||||||||||||||||||||    
T  19390549 ttgatgttcaattccccttgttttggttcccattcaagactaaattcacctggagttggtagcgaagaagcc--------aaccaatgaccaattatgtc 19390458  T
Q  363 ctgtttttcgattaactcccaacttcatcgttgggatcaaactgtaatcgggataatcaaaactctgccataataaactctttgtcccatttg 455  Q
    ||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||| |||||||    
T  19390457 ctgtttttcgattaactcccaacttcatcgttgggatcaaagtgtcgtcgggataatcaaaactctgccataataaactctttgtaccatttg 19390365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 76 - 455
Target Start/End: Complemental strand, 19337606 - 19337227
Alignment:
Q  76 taacctccccttcgaggttaggtaccatttcataaactttccatctttaactttgaaagagaaagactcttcagtcttgttagagacaataatgtactga 175  Q
    |||||||||||||| || || | |||||   ||||| || |||||||||||||  ||||  ||||| ||||||  ||||||||| ||||||||||||||     
T  19337606 taacctccccttcggggatatgaaccatcgtataaatttcccatctttaacttcaaaagcaaaagaatcttcatccttgttagacacaataatgtactgg 19337507  T
Q  176 tacatatgttgaacatttgcgggaatgttctcgaatattccattgcttttaagttttccacttttccaatacactatgccgcgtttcttgatgttcaatt 275  Q
    || ||| ||||||| || || |||||||||||||| |||||||||||||| ||||||||||||||||||| |||| |||| | |||| ||||||||||||    
T  19337506 tatatacgttgaactttcgcaggaatgttctcgaacattccattgcttttgagttttccacttttccaatgcactttgccacttttcctgatgttcaatt 19337407  T
Q  276 caccttgttttggttcccattcaagactaaattcacctgaatttattagcgaatcagtcaacctcgaaaccaatgaccaattatgtcctgtttttcgatt 375  Q
    |||||| ||||||||||||||||||||||| |||||||| | ||  |||||||| || |||||  ||||||||||||||||||||||||||||| |||||    
T  19337406 caccttcttttggttcccattcaagactaagttcacctggagttggtagcgaatgagccaaccgtgaaaccaatgaccaattatgtcctgttttacgatt 19337307  T
Q  376 aactcccaacttcatcgttgggatcaaactgtaatcgggataatcaaaactctgccataataaactctttgtcccatttg 455  Q
    ||| || |||||||||||||| | |||| |||   ||||| ||||||||||||||||||||| |||||||||||||||||    
T  19337306 aacacctaacttcatcgttggtaacaaagtgtctacgggagaatcaaaactctgccataatatactctttgtcccatttg 19337227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 76 - 455
Target Start/End: Complemental strand, 19355626 - 19355247
Alignment:
Q  76 taacctccccttcgaggttaggtaccatttcataaactttccatctttaactttgaaagagaaagactcttcagtcttgttagagacaataatgtactga 175  Q
    |||||||||||||| || || | |||||   ||||| || ||||| ||||||| |||||  ||||| ||||||  ||||||||| |||||||||||| ||    
T  19355626 taacctccccttcggggatatgaaccatcgtataaaattcccatcattaacttcgaaagcaaaagaatcttcatccttgttagacacaataatgtaccga 19355527  T
Q  176 tacatatgttgaacatttgcgggaatgttctcgaatattccattgcttttaagttttccacttttccaatacactatgccgcgtttcttgatgttcaatt 275  Q
    || |||  |||||| || || ||||||||||||||||||||||| ||| |||||||||| |||||||||| |||| |||||| |||| | ||||||||||    
T  19355526 tatatactttgaactttcgctggaatgttctcgaatattccattacttctaagttttccgcttttccaatgcactttgccgcttttccttatgttcaatt 19355427  T
Q  276 caccttgttttggttcccattcaagactaaattcacctgaatttattagcgaatcagtcaacctcgaaaccaatgaccaattatgtcctgtttttcgatt 375  Q
    |||||| |||||||||||||||||||||||||||||||||| ||  | |||||| || |||||  |||||||||||||||||||||||||||||||||||    
T  19355426 caccttcttttggttcccattcaagactaaattcacctgaagttggtcgcgaatgagccaaccgtgaaaccaatgaccaattatgtcctgtttttcgatt 19355327  T
Q  376 aactcccaacttcatcgttgggatcaaactgtaatcgggataatcaaaactctgccataataaactctttgtcccatttg 455  Q
    ||| || ||||||||||||||||||||||| |     ||||| |||||||||||||||| || |||||||||||||||||    
T  19355326 aacacctaacttcatcgttgggatcaaactatctgttggatagtcaaaactctgccatagtatactctttgtcccatttg 19355247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 151 - 453
Target Start/End: Complemental strand, 19376695 - 19376393
Alignment:
Q  151 cttgttagagacaataatgtactgatacatatgttgaacatttgcgggaatgttctcgaatattccattgcttttaagttttccacttttccaatacact 250  Q
    ||||||||||||||| |||||| ||||||||| ||||||||| || ||||| |||||||||| ||||||||||||||||||||| |||||||||||||||    
T  19376695 cttgttagagacaatgatgtaccgatacatattttgaacattggccggaatattctcgaataatccattgcttttaagttttccgcttttccaatacact 19376596  T
Q  251 atgccgcgtttcttgatgttcaattcaccttgttttggttcccattcaagactaaattcacctgaatttattagcgaatcagtcaacctcgaaaccaatg 350  Q
     |||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| || |  |||||  ||||||||  || |||||||    
T  19376595 ttgccgcttttcttgatgttcagttcaccttgttttggttcccactcaagactaaattcacctgaagttgtccgcgaaggagtcaaccaggacaccaatg 19376496  T
Q  351 accaattatgtcctgtttttcgattaactcccaacttcatcgttgggatcaaactgtaatcgggataatcaaaactctgccataataaactctttgtccc 450  Q
    ||||||||| |||||||||||||||||| || |||||||||||||||||||||  ||     |||||||||||||||||||| || | | |||||| |||    
T  19376495 accaattatatcctgtttttcgattaacgcctaacttcatcgttgggatcaaaacgtctgatggataatcaaaactctgccacaaaacagtctttgaccc 19376396  T
Q  451 att 453  Q
    |||    
T  19376395 att 19376393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 130 - 450
Target Start/End: Original strand, 19172833 - 19173153
Alignment:
Q  130 gaaagagaaagactcttcagtcttgttagagacaataatgtactgatacatatgttgaacatttgcgggaatgttctcgaatattccattgcttttaagt 229  Q
    ||||| ||| || ||||||  ||||||||||||||||||||| ||||||| ||||||||| ||  |  ||||||||| ||||| ||||||||| ||||||    
T  19172833 gaaagtgaaggagtcttcatccttgttagagacaataatgtattgatacacatgttgaactttcactagaatgttcttgaataatccattgctgttaagt 19172932  T
Q  230 tttccacttttccaatacactatgccgcgtttcttgatgttcaattcaccttgttttggttcccattcaagactaaattcacctgaatttattagcgaat 329  Q
    ||||| ||||||||||||||| ||||||||| ||||||||||||||||||||   ||||||||||||||| ||||||| ||||||||||   |||||||     
T  19172933 tttccgcttttccaatacactttgccgcgttgcttgatgttcaattcaccttccattggttcccattcaacactaaatccacctgaattcggtagcgaag 19173032  T
Q  330 cagtcaacctcgaaaccaatgaccaattatgtcctgtttttcgattaactcccaacttcatcgttgggatcaaact-gtaatcgggataatcaaaactct 428  Q
     || ||||| |||||||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||| | || || |||||||||||||||||    
T  19173033 gagccaaccacgaaaccaatgaccaattatgtccggtttttcggttaacacctaacttcatcgttgggatcaaagtggttat-gggataatcaaaactct 19173131  T
Q  429 gccataataaactctttgtccc 450  Q
    ||||||||| ||||||||||||    
T  19173132 gccataatatactctttgtccc 19173153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 130 - 455
Target Start/End: Complemental strand, 19287813 - 19287488
Alignment:
Q  130 gaaagagaaagactcttcagtcttgttagagacaataatgtactgatacatatgttgaacatttgcgggaatgttctcgaatattccattgcttttaagt 229  Q
    ||||| ||| || ||||||  ||||||||||||||||||||| ||||||| | ||||||| ||  | ||||||||||||||||  ||||||| | || ||    
T  19287813 gaaagtgaaggagtcttcatccttgttagagacaataatgtattgatacacacgttgaactttcactggaatgttctcgaataaaccattgcgtctacgt 19287714  T
Q  230 tttccacttttccaatacactatgccgcgtttcttgatgttcaattcaccttgttttggttcccattcaagactaaattcacctgaatttattagcgaat 329  Q
    ||||| ||||||||||||||| ||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||  ||||||||    
T  19287713 tttccgcttttccaatacactttgccgcgttgcttgatgttcaattcaccttctttaggttcccattcaagactaaatccacctgaatttggtagcgaat 19287614  T
Q  330 cagtcaacctcgaaaccaatgaccaattatgtcctgtttttcgattaactcccaacttcatcgttgggatcaaactgtaatcgggataatcaaaactctg 429  Q
     || |||||  |||||||| |||||||||||||| |||||||| ||||| || |||||||| |||||||||||| ||     ||||||||||||||||||    
T  19287613 gagccaaccatgaaaccaacgaccaattatgtccggtttttcggttaacacctaacttcattgttgggatcaaagtggctgtgggataatcaaaactctg 19287514  T
Q  430 ccataataaactctttgtcccatttg 455  Q
    |||||||| | |||||||||||||||    
T  19287513 ccataatatattctttgtcccatttg 19287488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 118 - 403
Target Start/End: Complemental strand, 19404859 - 19404574
Alignment:
Q  118 atctttaactttgaaagagaaagactcttcagtcttgttagagacaataatgtactgatacatatgttgaacatttgcgggaatgttctcgaatattcca 217  Q
    |||||| | |||||||| |||||| ||||||  |||||||||||||||| |||| |||||||||  ||||||||| || ||||| |||||||||| ||||    
T  19404859 atctttgattttgaaagtgaaagaatcttcatccttgttagagacaatagtgtattgatacatagtttgaacattggccggaatattctcgaataatcca 19404760  T
Q  218 ttgcttttaagttttccacttttccaatacactatgccgcgtttcttgatgttcaattcaccttgttttggttcccattcaagactaaattcacctgaat 317  Q
    | ||||||||||||||| ||||||||||||||| |||| | |||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||    
T  19404759 tcgcttttaagttttccgcttttccaatacactttgcctcttttcttgatgttcagttcaccttgttttggttcccactcaagactaaatttacctgaat 19404660  T
Q  318 ttattagcgaatcagtcaacctcgaaaccaatgaccaattatgtcctgtttttcgattaactcccaacttcatcgttgggatcaaa 403  Q
    ||    |||||  ||| ||||  || |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  19404659 ttggccgcgaaggagttaaccatgacaccaatgaccaattatgtgctgtttttcgattaactcctaacttcatcgttgggatcaaa 19404574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 61 - 308
Target Start/End: Complemental strand, 19410948 - 19410701
Alignment:
Q  61 tccatcaccacctactaacctccccttcgaggttaggtaccatttcataaactttccatctttaactttgaaagagaaagactcttcagtcttgttagag 160  Q
    ||||||| ||||||||||| |||||||||||| ||| | |||||    |||||| ||||||||||||| ||| | |||||| ||||||  ||||||||||    
T  19410948 tccatcatcacctactaacttccccttcgaggatagttcccattgtgcaaacttcccatctttaacttcgaacgtgaaagaatcttcatccttgttagag 19410849  T
Q  161 acaataatgtactgatacatatgttgaacatttgcgggaatgttctcgaatattccattgcttttaagttttccacttttccaatacactatgccgcgtt 260  Q
    |||||||||||||||||| ||  ||||||||| || ||||| |||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| ||    
T  19410848 acaataatgtactgatacctactttgaacattggccggaatattctcgaataatccattgcttttaagttttccgcttttccaatacactttgccgcttt 19410749  T
Q  261 tcttgatgttcaattcaccttgttttggttcccattcaagactaaatt 308  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  19410748 tcttgatgttcaattcaccttgttttggttcccattcaagattaaatt 19410701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 61 - 308
Target Start/End: Complemental strand, 19457967 - 19457720
Alignment:
Q  61 tccatcaccacctactaacctccccttcgaggttaggtaccatttcataaactttccatctttaactttgaaagagaaagactcttcagtcttgttagag 160  Q
    ||||||| ||||||||||| |||||||||||| ||| | |||||    |||||| ||||||||||||| ||| | |||||| ||||||  ||||||||||    
T  19457967 tccatcatcacctactaacttccccttcgaggatagttcccattgtgcaaacttcccatctttaacttcgaacgtgaaagaatcttcatccttgttagag 19457868  T
Q  161 acaataatgtactgatacatatgttgaacatttgcgggaatgttctcgaatattccattgcttttaagttttccacttttccaatacactatgccgcgtt 260  Q
    |||||||||||||||||| ||  ||||||||| || ||||| |||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| ||    
T  19457867 acaataatgtactgatacctactttgaacattggccggaatattctcgaataatccattgcttttaagttttccgcttttccaatacactttgccgcttt 19457768  T
Q  261 tcttgatgttcaattcaccttgttttggttcccattcaagactaaatt 308  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  19457767 tcttgatgttcaattcaccttgttttggttcccattcaagattaaatt 19457720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 61 - 308
Target Start/End: Original strand, 19523111 - 19523358
Alignment:
Q  61 tccatcaccacctactaacctccccttcgaggttaggtaccatttcataaactttccatctttaactttgaaagagaaagactcttcagtcttgttagag 160  Q
    ||||||| ||||||||||| |||||||||||| ||| | |||||    |||||| ||||||||||||| ||| | |||||| ||||||  ||||||||||    
T  19523111 tccatcatcacctactaacttccccttcgaggatagttcccattgtgcaaacttcccatctttaacttcgaacgtgaaagaatcttcatccttgttagag 19523210  T
Q  161 acaataatgtactgatacatatgttgaacatttgcgggaatgttctcgaatattccattgcttttaagttttccacttttccaatacactatgccgcgtt 260  Q
    |||||||||||||||||| ||  ||||||||| || ||||| |||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| ||    
T  19523211 acaataatgtactgatacctactttgaacattggccggaatattctcgaataatccattgcttttaagttttccgcttttccaatacactttgccgcttt 19523310  T
Q  261 tcttgatgttcaattcaccttgttttggttcccattcaagactaaatt 308  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  19523311 tcttgatgttcaattcaccttgttttggttcccattcaagattaaatt 19523358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 61 - 308
Target Start/End: Original strand, 19469476 - 19469723
Alignment:
Q  61 tccatcaccacctactaacctccccttcgaggttaggtaccatttcataaactttccatctttaactttgaaagagaaagactcttcagtcttgttagag 160  Q
    ||||||| |||||||||||||||| |||||| |||| | |||||    |||||| ||||||||||||| ||| | |||||| ||||||  ||||||||||    
T  19469476 tccatcatcacctactaacctccctttcgagattagttcccattgtgcaaacttcccatctttaacttcgaacgtgaaagaatcttcatccttgttagag 19469575  T
Q  161 acaataatgtactgatacatatgttgaacatttgcgggaatgttctcgaatattccattgcttttaagttttccacttttccaatacactatgccgcgtt 260  Q
    |||||||||||||||||| ||| ||||||||| || ||||| |||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| ||    
T  19469576 acaataatgtactgatacctattttgaacattggccggaatattctcgaataatccattgcttttaagttttccgcttttccaatacactttgccgcttt 19469675  T
Q  261 tcttgatgttcaattcaccttgttttggttcccattcaagactaaatt 308  Q
    |||||||||||||||| |||| ||||||| ||||||||||| ||||||    
T  19469676 tcttgatgttcaattctccttcttttggtccccattcaagattaaatt 19469723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 61 - 308
Target Start/End: Original strand, 19540400 - 19540647
Alignment:
Q  61 tccatcaccacctactaacctccccttcgaggttaggtaccatttcataaactttccatctttaactttgaaagagaaagactcttcagtcttgttagag 160  Q
    ||||||| |||||||||||||||| |||||| |||| | |||||    |||||| ||||||||||||| ||| | |||||| ||||||  ||||||||||    
T  19540400 tccatcatcacctactaacctccctttcgagattagttcccattgtgcaaacttcccatctttaacttcgaacgtgaaagaatcttcatccttgttagag 19540499  T
Q  161 acaataatgtactgatacatatgttgaacatttgcgggaatgttctcgaatattccattgcttttaagttttccacttttccaatacactatgccgcgtt 260  Q
    |||||||||||||||||| ||| ||||||||| || ||||| |||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| ||    
T  19540500 acaataatgtactgatacctattttgaacattggccggaatattctcgaataatccattgcttttaagttttccgcttttccaatacactttgccgcttt 19540599  T
Q  261 tcttgatgttcaattcaccttgttttggttcccattcaagactaaatt 308  Q
    |||||||||||||||| |||| ||||||| ||||||||||| ||||||    
T  19540600 tcttgatgttcaattctccttcttttggtccccattcaagattaaatt 19540647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 61 - 308
Target Start/End: Complemental strand, 19592298 - 19592051
Alignment:
Q  61 tccatcaccacctactaacctccccttcgaggttaggtaccatttcataaactttccatctttaactttgaaagagaaagactcttcagtcttgttagag 160  Q
    ||||||| |||||||||||||||| |||||| |||| | |||||    |||||| ||||||||||||| ||| | |||||| ||||||  ||||||||||    
T  19592298 tccatcatcacctactaacctccctttcgagattagttcccattgtgcaaacttcccatctttaacttcgaacgtgaaagaatcttcatccttgttagag 19592199  T
Q  161 acaataatgtactgatacatatgttgaacatttgcgggaatgttctcgaatattccattgcttttaagttttccacttttccaatacactatgccgcgtt 260  Q
    |||||||||||||||||| ||| ||||||||| || ||||| |||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| ||    
T  19592198 acaataatgtactgatacctattttgaacattggccggaatattctcgaataatccattgcttttaagttttccgcttttccaatacactttgccgcttt 19592099  T
Q  261 tcttgatgttcaattcaccttgttttggttcccattcaagactaaatt 308  Q
    |||||||||||||||| |||| ||||||| ||||||||||| ||||||    
T  19592098 tcttgatgttcaattctccttcttttggtccccattcaagattaaatt 19592051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 127 - 316
Target Start/End: Original strand, 19468606 - 19468795
Alignment:
Q  127 tttgaaagagaaagactcttcagtctt-gttagagacaataatgtactgatacatatgttgaacatttgcgggaatgttctcgaatattccattgctttt 225  Q
    |||||||| |||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||  | ||||| |||||||||| ||||||||||||    
T  19468606 tttgaaagtgaaagaatcttc-gtctttgttagagacaataatgtactgatacatatgttgaacattcaccggaatattctcgaataatccattgctttt 19468704  T
Q  226 aagttttccacttttccaatacactatgccgcgtttcttgatgttcaattcaccttgttttggttcccattcaagactaaattcacctgaa 316  Q
    ||||||||| ||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||| || ||| ||||||||||||||    
T  19468705 aagttttccgcttttccaatacactttgccgcttttcttgatgatcaattcaccttgttttggttcccaatctagattaaattcacctgaa 19468795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 127 - 316
Target Start/End: Original strand, 19555527 - 19555716
Alignment:
Q  127 tttgaaagagaaagactcttcagtctt-gttagagacaataatgtactgatacatatgttgaacatttgcgggaatgttctcgaatattccattgctttt 225  Q
    |||||||| |||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||  | ||||| |||||||||| ||||||||||||    
T  19555527 tttgaaagtgaaagaatcttc-gtctttgttagagacaataatgtactgatacatatgttgaacattcaccggaatattctcgaataatccattgctttt 19555625  T
Q  226 aagttttccacttttccaatacactatgccgcgtttcttgatgttcaattcaccttgttttggttcccattcaagactaaattcacctgaa 316  Q
    ||||||||| ||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||| || ||| ||||||||||||||    
T  19555626 aagttttccgcttttccaatacactttgccgcttttcttgatgatcaattcaccttgttttggttcccaatctagattaaattcacctgaa 19555716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 341 - 455
Target Start/End: Original strand, 19469729 - 19469843
Alignment:
Q  341 gaaaccaatgaccaattatgtcctgtttttcgattaactcccaacttcatcgttgggatcaaactgtaatcgggataatcaaaactctgccataataaac 440  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||   ||    ||||||||| |||||||||||||||| ||    
T  19469729 gaaaccaatgaccatttatgtccagtttttcgattaactcccaacttcatcattgggatcaatacgtctgtgggataatcgaaactctgccataatatac 19469828  T
Q  441 tctttgtcccatttg 455  Q
    |||||||||||||||    
T  19469829 tctttgtcccatttg 19469843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 341 - 455
Target Start/End: Original strand, 19540653 - 19540767
Alignment:
Q  341 gaaaccaatgaccaattatgtcctgtttttcgattaactcccaacttcatcgttgggatcaaactgtaatcgggataatcaaaactctgccataataaac 440  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||   ||    ||||||||| |||||||||||||||| ||    
T  19540653 gaaaccaatgaccatttatgtccagtttttcgattaactcccaacttcatcattgggatcaatacgtctgtgggataatcgaaactctgccataatatac 19540752  T
Q  441 tctttgtcccatttg 455  Q
    |||||||||||||||    
T  19540753 tctttgtcccatttg 19540767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 341 - 455
Target Start/End: Complemental strand, 19592045 - 19591931
Alignment:
Q  341 gaaaccaatgaccaattatgtcctgtttttcgattaactcccaacttcatcgttgggatcaaactgtaatcgggataatcaaaactctgccataataaac 440  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||   ||    ||||||||| |||||||||||||||| ||    
T  19592045 gaaaccaatgaccatttatgtccagtttttcgattaactcccaacttcatcattgggatcaatacgtctgtgggataatcgaaactctgccataatatac 19591946  T
Q  441 tctttgtcccatttg 455  Q
    |||||||||||||||    
T  19591945 tctttgtcccatttg 19591931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 152 - 276
Target Start/End: Complemental strand, 19371037 - 19370913
Alignment:
Q  152 ttgttagagacaataatgtactgatacatatgttgaacatttgcgggaatgttctcgaatattccattgcttttaagttttccacttttccaatacacta 251  Q
    |||||||||||||| |||||  |||||| |||||| |||||  | |||||||||||||||| |||||||||| ||||||||||||||||||||| ||||     
T  19371037 ttgttagagacaatcatgtatcgatacacatgttggacattctctggaatgttctcgaataatccattgcttctaagttttccacttttccaatgcactt 19370938  T
Q  252 tgccgcgtttcttgatgttcaattc 276  Q
    ||||  ||||||| |||||||||||    
T  19370937 tgccttgtttcttaatgttcaattc 19370913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 341 - 432
Target Start/End: Original strand, 19468793 - 19468884
Alignment:
Q  341 gaaaccaatgaccaattatgtcctgtttttcgattaactcccaacttcatcgttgggatcaaactgtaatcgggataatcaaaactctgcca 432  Q
    ||||||||||||||||||||||||||||| |||||||| || |||||||||||||| | |||| ||| ||||||||||||||||||||||||    
T  19468793 gaaaccaatgaccaattatgtcctgttttccgattaacgcctaacttcatcgttggaaccaaagtgtcatcgggataatcaaaactctgcca 19468884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 341 - 432
Target Start/End: Original strand, 19555714 - 19555805
Alignment:
Q  341 gaaaccaatgaccaattatgtcctgtttttcgattaactcccaacttcatcgttgggatcaaactgtaatcgggataatcaaaactctgcca 432  Q
    ||||||||||||||||||||||||||||| |||||||| || |||||||||||||| | |||| ||| ||||||||||||||||||||||||    
T  19555714 gaaaccaatgaccaattatgtcctgttttccgattaacgcctaacttcatcgttggaaccaaagtgtcatcgggataatcaaaactctgcca 19555805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 152 - 276
Target Start/End: Complemental strand, 19341257 - 19341133
Alignment:
Q  152 ttgttagagacaataatgtactgatacatatgttgaacatttgcgggaatgttctcgaatattccattgcttttaagttttccacttttccaatacacta 251  Q
    |||||||||||||| |||||  |||||| |||||| |||||  |  ||||||||||||||| ||||||||||  |||||||||||||||||||| ||||     
T  19341257 ttgttagagacaatcatgtatcgatacacatgttggacattctctagaatgttctcgaataatccattgcttccaagttttccacttttccaatgcactt 19341158  T
Q  252 tgccgcgtttcttgatgttcaattc 276  Q
    ||||  ||||||| |||||||||||    
T  19341157 tgccttgtttcttaatgttcaattc 19341133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 341 - 432
Target Start/End: Complemental strand, 19410695 - 19410604
Alignment:
Q  341 gaaaccaatgaccaattatgtcctgtttttcgattaactcccaacttcatcgttgggatcaaactgtaatcgggataatcaaaactctgcca 432  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||  ||     ||||||||||||||||||||    
T  19410695 gaaaccaatgaccaattatgtcctgtttttcgattaacgcctaacttcatcattgggatcaaaacgtctgatggataatcaaaactctgcca 19410604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 322 - 453
Target Start/End: Complemental strand, 19448421 - 19448290
Alignment:
Q  322 tagcgaatcagtcaacctcgaaaccaatgaccaattatgtcctgtttttcgattaactcccaacttcatcgttgggatcaaactgtaatcgggataatca 421  Q
    |||||||  ||||||||  || ||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||  ||     |||||||||    
T  19448421 tagcgaaggagtcaaccatgacaccaatgaccaattatgtcctgttttttgattaacgcctaacttcatcgttgggatcaaaacgtctgatggataatca 19448322  T
Q  422 aaactctgccataataaactctttgtcccatt 453  Q
    ||||||||||| || | | |||||| ||||||    
T  19448321 aaactctgccacaacacagtctttgacccatt 19448290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 341 - 432
Target Start/End: Complemental strand, 19457714 - 19457623
Alignment:
Q  341 gaaaccaatgaccaattatgtcctgtttttcgattaactcccaacttcatcgttgggatcaaactgtaatcgggataatcaaaactctgcca 432  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||  ||     ||||||||||||||||||||    
T  19457714 gaaaccaatgaccaattatgtcctgtttttcgattaacgcctaacttcatcattgggatcaaaacgtctgatggataatcaaaactctgcca 19457623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 341 - 432
Target Start/End: Original strand, 19523364 - 19523455
Alignment:
Q  341 gaaaccaatgaccaattatgtcctgtttttcgattaactcccaacttcatcgttgggatcaaactgtaatcgggataatcaaaactctgcca 432  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||  ||     ||||||||||||||||||||    
T  19523364 gaaaccaatgaccaattatgtcctgtttttcgattaacgcctaacttcatcattgggatcaaaacgtctgatggataatcaaaactctgcca 19523455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 322 - 453
Target Start/End: Original strand, 19532655 - 19532786
Alignment:
Q  322 tagcgaatcagtcaacctcgaaaccaatgaccaattatgtcctgtttttcgattaactcccaacttcatcgttgggatcaaactgtaatcgggataatca 421  Q
    |||||||  ||||||||  || ||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||  ||     |||||||||    
T  19532655 tagcgaaggagtcaaccatgacaccaatgaccaattatgtcctgttttttgattaacgcctaacttcatcgttgggatcaaaacgtctgatggataatca 19532754  T
Q  422 aaactctgccataataaactctttgtcccatt 453  Q
    ||||||||||| || | | |||||| ||||||    
T  19532755 aaactctgccacaacacagtctttgacccatt 19532786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 19404962 - 19404926
Alignment:
Q  12 tattatatccataacaaatgtctgcatttccaatatc 48  Q
    |||||||||||||||| || |||||||||||||||||    
T  19404962 tattatatccataacacatatctgcatttccaatatc 19404926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 12 - 455
Target Start/End: Original strand, 36314548 - 36314994
Alignment:
Q  12 tattatatccataacaaatgtctgcatttccaatatcaacat---cattgtctccatcaccacctactaacctccccttcgaggttaggtaccatttcat 108  Q
    |||||||||||||||| || |||||||||||||| ||  ||    |||||||| || |||||| |  |||| | |||||||||| ||| | ||||   ||    
T  36314548 tattatatccataacatatatctgcatttccaatttctccactagcattgtcttcaacaccacttgttaacttgcccttcgaggatagctcccatcatat 36314647  T
Q  109 aaactttccatctttaactttgaaagagaaagactcttcagtcttgttagagacaataatgtactgatacatatgttgaacatttgcgggaatgttctcg 208  Q
    |||||| |||||||||||||  |||| |||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||  | ||||||||||||    
T  36314648 aaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcactggaatgttctcg 36314747  T
Q  209 aatattccattgcttttaagttttccacttttccaatacactatgccgcgtttcttgatgttcaattcaccttgttttggttcccattcaagactaaatt 308  Q
    || ||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  36314748 aacattccattgcttttaagttttccacttttccaatacactttcccgcgttttttgatgttcaattcaccttgttttggttcccattcaagactaaatt 36314847  T
Q  309 cacctgaatttattagcgaatcagtcaacctcgaaaccaatgaccaattatgtcctgtttttcgattaactcccaacttcatcgttgggatcaaactgta 408  Q
    |||||||  ||  |||| ||  ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||     
T  36314848 cacctgacgtttgtagcaaaggagtcaaccatgaaaccaatgaccaattatgtcctgtttttcgattaactcccaacttcatcgttgggatcaaaaagtt 36314947  T
Q  409 atcgggataatcaaaactctgccataataaactctttgtcccatttg 455  Q
       |||||||||||||||||||||||||| |||||||||||||||||    
T  36314948 tgtgggataatcaaaactctgccataatatactctttgtcccatttg 36314994  T

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Target: chr6 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 155 - 435
Target Start/End: Complemental strand, 19543140 - 19542860
Alignment:
Q  155 ttagagacaataatgtactgatacatatgttgaacatttgcgggaatgttctcgaatattccattgcttttaagttttccacttttccaatacactatgc 254  Q
    ||||| ||||||||||| | ||||| | |||||||||| || || |||||| ||||||  ||||| ||| |||||||||| ||||||||||||||| |||    
T  19543140 ttagaaacaataatgtattcatacacacgttgaacattcgccggtatgttcacgaataacccatttcttctaagttttccgcttttccaatacactttgc 19543041  T
Q  255 cgcgtttcttgatgttcaattcaccttgttttggttcccattcaagactaaattcacctgaatttattagcgaatcagtcaacctcgaaaccaatgacca 354  Q
    ||| ||||||||| | |||||||| ||| ||||||||||||||||||||||||||||||||| ||  |||||||  ||||| ||  ||||| || |||||    
T  19543040 cgcttttcttgatttccaattcacgttgctttggttcccattcaagactaaattcacctgaagttgatagcgaaggagtcatccatgaaactaaagacca 19542941  T
Q  355 attatgtcctgtttttcgattaactcccaacttcatcgttgggatcaaactgtaatcgggataatcaaaactctgccataa 435  Q
    ||||||||| ||| |||| ||||  || ||||||||| |||| ||| ||| ||    | ||| ||||||||||||||||||    
T  19542940 attatgtccggttattcggttaatacctaacttcatcattggaatccaacagtgtaagagatgatcaaaactctgccataa 19542860  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 19543281 - 19543244
Alignment:
Q  11 atattatatccataacaaatgtctgcatttccaatatc 48  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  19543281 atattatatccataacacaagtctgcatttccaatatc 19543244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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