View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20020_high_1 (Length: 623)
Name: NF20020_high_1
Description: NF20020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20020_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 585; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 12 - 604
Target Start/End: Complemental strand, 28526814 - 28526222
Alignment:
| Q |
12 |
gaagaatatgctgccactattggtgcaatgttaccataccttgttcctagaaaggaaattgaagctgttggttttttagtagtgttaaggtagattctaa |
111 |
Q |
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| T |
28526814 |
gaagaaaatgctgccactattggtgcaatgttaccataccttgttcctagaaaggaaattgaagctgttggttttttagtagtgttaaggtagattctaa |
28526715 |
T |
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| Q |
112 |
tagctttacctgctgaagcacctaaggaagtagctggcaaaatgtgaggatcagaaagaagctcttcgccttgatttgcagagttgagtagtatcattcc |
211 |
Q |
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| T |
28526714 |
tagctttacctgctgaagcacctaaggaagtagctggcaaaatgtgaggatcagaaagaagctcttcgccttgatttgcagagttgagtagtatcattcc |
28526615 |
T |
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| Q |
212 |
atatccacctgaatttttaacttccgctcctttttcggttctaccattgattcctctttcacaaacaactatttttccaaaaacaagttttttatcaagt |
311 |
Q |
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| T |
28526614 |
atatccacctgaatttttaacttccgctcctttttcggttctaccattgattcctctttcacaaacaactatttttccaaaaacaagttttttatcaagt |
28526515 |
T |
|
| Q |
312 |
gagttttttgtgcagaatactgcttctctctttttacctgctgtttttccataaacaagtgggaattgttggtttggttcgttttttccttggtacaaag |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28526514 |
gagttttttgtgcagaatactgcttctctctttttacctgctgtttttccataaacaagtgggaattgttggtttggttcgttttttccttggtacaaag |
28526415 |
T |
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| Q |
412 |
atgtgccttcaaaattttttgagtttccaagttttacttttgttggaaaagttctgtcaatgtagctagcagcaactgtcatgatccatggtgcgccgtt |
511 |
Q |
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| T |
28526414 |
atgtgccttcaaaattttttgagtttccaagttttacttttgttggaaaagttctgtcaatgtagctagcagcaactgtcatgatccatggtgcgccgtt |
28526315 |
T |
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| Q |
512 |
tcccaccgttgatgcaaaagggcctgagttgcctgctgagcaagaaacaaaaacaccgtttttcgttgctccaaatgaagctatagcaatact |
604 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28526314 |
tcccacagttgatgcaaaagggcctgagttgcctgctgagcaagaaacaaaaacaccgtttttcgttgctccaaatgaagctatagcaatact |
28526222 |
T |
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