View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20020_high_10 (Length: 338)
Name: NF20020_high_10
Description: NF20020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20020_high_10 |
 | |
|
| [»] scaffold1961 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 324
Target Start/End: Original strand, 15197070 - 15197376
Alignment:
| Q |
18 |
ttaattatgaaaataagctaacaacaatagacatatcatcatcattaccaacttgataatttaaaaaaccctaaatccaatgataatattttaaaagaca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15197070 |
ttaattatgaaaataagctaacaacaatagacatatcatcatcattaccaacttgataatttaaaaaaccctaaatccaatgataatattttaaaagaca |
15197169 |
T |
|
| Q |
118 |
ggcacagtgaacacaaataagaatgatgagaaagaacctgtaaagctcttcaaaactgagaatattcctagcgttgtgattgtatatccgacgaaatgca |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
15197170 |
ggcacagtgaacacaaataagaatgatgagaaagaacctgtaaagctcttcaaaactgagaatattcctagcgttgtgattgtatatccgacgaattgca |
15197269 |
T |
|
| Q |
218 |
tgttccagaattttccaagccttgtcatcatattcagcactcatgtccttgaaagcctctatcgaaacatccttattcttcttgatgttattcttcttct |
317 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||| |||||||| |||||||||||||||| |
|
|
| T |
15197270 |
tgttccagaatgttccaagccttgtcaccatattcagcactcatgtccttgaaagcctctataggaacatccttcttcttcttcatgttattcttcttct |
15197369 |
T |
|
| Q |
318 |
ttttctt |
324 |
Q |
| |
|
| ||||| |
|
|
| T |
15197370 |
tcttctt |
15197376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 324
Target Start/End: Original strand, 15217488 - 15217794
Alignment:
| Q |
18 |
ttaattatgaaaataagctaacaacaatagacatatcatcatcattaccaacttgataatttaaaaaaccctaaatccaatgataatattttaaaagaca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15217488 |
ttaattatgaaaataagctaacaacaatagacatatcatcatcattaccaacttgataatttaaaaaaccctaaatccaatgataatattttaaaagaca |
15217587 |
T |
|
| Q |
118 |
ggcacagtgaacacaaataagaatgatgagaaagaacctgtaaagctcttcaaaactgagaatattcctagcgttgtgattgtatatccgacgaaatgca |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
15217588 |
ggcacagtgaacacaaataagaatgatgagaaagaacctgtaaagctcttcaaaactgagaatattcctagcgttgtgattgtatatccgacgaattgca |
15217687 |
T |
|
| Q |
218 |
tgttccagaattttccaagccttgtcatcatattcagcactcatgtccttgaaagcctctatcgaaacatccttattcttcttgatgttattcttcttct |
317 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||| |||||||| |||||||||||||||| |
|
|
| T |
15217688 |
tgttccagaatgttccaagccttgtcaccatattcagcactcatgtccttgaaagcctctataggaacatccttcttcttcttcatgttattcttcttct |
15217787 |
T |
|
| Q |
318 |
ttttctt |
324 |
Q |
| |
|
| ||||| |
|
|
| T |
15217788 |
tcttctt |
15217794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1961 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: scaffold1961
Description:
Target: scaffold1961; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 126 - 228
Target Start/End: Original strand, 1102 - 1204
Alignment:
| Q |
126 |
gaacacaaataagaatgatgagaaagaacctgtaaagctcttcaaaactgagaatattcctagcgttgtgattgtatatccgacgaaatgcatgttccag |
225 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1102 |
gaacacaaatgagaatgatgagaaagaacctgtaaagctcttaaaaactgagaatattcctagcgttgtgattgtatatccgacgaattgcatgttccag |
1201 |
T |
|
| Q |
226 |
aat |
228 |
Q |
| |
|
||| |
|
|
| T |
1202 |
aat |
1204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 138 - 254
Target Start/End: Original strand, 14752092 - 14752205
Alignment:
| Q |
138 |
gaatgatgagaaagaacctgtaaagctcttcaaaactgagaatattcctagcgttgtgattgtatatccgacgaaatgcatgttccagaattttccaagc |
237 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||| | |||| |||||||||||||||| || ||||||||||||| ||||| ||||||| |
|
|
| T |
14752092 |
gaatgatgagaaagtacctgtgaagctcttcaaaactgagacca---ctagtgttgtgattgtatatctgatgaaatgcatgttcaagaatgttccaagt |
14752188 |
T |
|
| Q |
238 |
cttgtcatcatattcag |
254 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
14752189 |
cttgtcaccatattcag |
14752205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 137 - 256
Target Start/End: Original strand, 14760225 - 14760341
Alignment:
| Q |
137 |
agaatgatgagaaagaacctgtaaagctcttcaaaactgagaatattcctagcgttgtgattgtatatccgacgaaatgcatgttccagaattttccaag |
236 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||| | ||| |||||| ||||| || ||||||| |
|
|
| T |
14760225 |
agaatcatgagaaagaacctgtaaagctcttcaaaactg---atattcctaacgttgtggttgtataagtcatgaattgcatgctccaggatgttccaag |
14760321 |
T |
|
| Q |
237 |
ccttgtcatcatattcagca |
256 |
Q |
| |
|
||||||| |||| |||||| |
|
|
| T |
14760322 |
tcttgtcagcataatcagca |
14760341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 143 - 256
Target Start/End: Complemental strand, 17568294 - 17568184
Alignment:
| Q |
143 |
atgagaaagaacctgtaaagctcttcaaaactgagaatattcctagcgttgtgattgtatatccgacgaaatgcatgttccagaattttccaagccttgt |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||| | ||| |||||| ||||| || ||||||| ||||| |
|
|
| T |
17568294 |
atgagaaagaacctgtaaagctcttcaaaactg---atattcctaacgttgtggttgtataagtcatgaattgcatgctccaggatgttccaagtcttgt |
17568198 |
T |
|
| Q |
243 |
catcatattcagca |
256 |
Q |
| |
|
|| |||| |||||| |
|
|
| T |
17568197 |
cagcataatcagca |
17568184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 253
Target Start/End: Original strand, 15884339 - 15884444
Alignment:
| Q |
145 |
gagaaagaacctgtaaagctcttcaaaactgagaatattc-ctagcgttgtgattgtatatccgacgaaatgcatgttccagaattttccaagccttgtc |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||| || || | || |||||||||||||||| || ||| ||||| ||| ||||| ||||||| | |||| |
|
|
| T |
15884339 |
gagaaagaacctgtaaagctcttcaaaactg----taatcacaagagttgtgattgtatatctgatgaattgcatcttcaagaatgttccaagtcatgtc |
15884434 |
T |
|
| Q |
244 |
atcatattca |
253 |
Q |
| |
|
| || ||||| |
|
|
| T |
15884435 |
agcaaattca |
15884444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 178
Target Start/End: Original strand, 17622439 - 17622478
Alignment:
| Q |
139 |
aatgatgagaaagaacctgtaaagctcttcaaaactgaga |
178 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
17622439 |
aatgatgagaaagaacctgtgaagctcttcaaaattgaga |
17622478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University