View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20020_high_12 (Length: 320)
Name: NF20020_high_12
Description: NF20020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20020_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 20 - 298
Target Start/End: Complemental strand, 10343860 - 10343578
Alignment:
| Q |
20 |
aagtgactgatcaatgtcttcctgtatatacatcgagagta----tggagctatattt-agtccctatatatataattgtttcatgcacctgttgcagga |
114 |
Q |
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| T |
10343860 |
aagtgactgatcaatgtcttcctgtatatacatcgagagtacatatggagctatattttagtccatatatatataaatgtttcatgcacctgttgc-gga |
10343762 |
T |
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| Q |
115 |
caaactgaggctggtgcataaaacaatagtaatgtaattcagttttgtctttagatggtggaattaacaccaccactactactagtactagttgtaatat |
214 |
Q |
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| T |
10343761 |
taaactgaagttggtgcatgaaacaatagtaatgtaattcagttttgtctttagatggtggaattaacaccaccactactactagtactagttgtactat |
10343662 |
T |
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| Q |
215 |
gaaggattatcattggcatgataatttatcaatcaagagaaacagatcacctataggggatagttctagtcaaggttcacaagg |
298 |
Q |
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| T |
10343661 |
gaaggattatcattggcatgataacttatcaatcaagagatatatatcacctatatgagagagttctagtcaaggttcgcaagg |
10343578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 165 - 296
Target Start/End: Original strand, 10181092 - 10181223
Alignment:
| Q |
165 |
ttagatggtggaattaacaccaccactactactagtactagttgtaatatgaaggattatcattggcatgataatttatcaatcaagagaaacagatcac |
264 |
Q |
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| T |
10181092 |
ttagatagtgcaactaacaccaccactaataatactactagtagtactatgaatgatgatcagtggcctgataatttatcaatcaagagaagtagatcac |
10181191 |
T |
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| Q |
265 |
ctataggggatagttctagtcaaggttcacaa |
296 |
Q |
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| T |
10181192 |
ctaaaggagaaagttatagtcaagattcacaa |
10181223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 135 - 242
Target Start/End: Complemental strand, 10182308 - 10182201
Alignment:
| Q |
135 |
aaacaatagtaatgtaattcagttttgtctttagatggtggaattaacaccaccactactactagtactagttgtaatatgaaggattatcattggcatg |
234 |
Q |
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||||||||||||||| |||| |||||| |||||||||| ||||||||||||||||||||| || || |||| | | ||||||||| ||| | |||||| |
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| T |
10182308 |
aaacaatagtaatgtcattccattttgtatttagatggtagaattaacaccaccactactaatactagtagtagcactatgaaggaatattagcggcatg |
10182209 |
T |
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| Q |
235 |
ataattta |
242 |
Q |
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|||||||| |
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| T |
10182208 |
ataattta |
10182201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 182 - 297
Target Start/End: Original strand, 10343009 - 10343124
Alignment:
| Q |
182 |
caccaccactactactagtactagttgtaatatgaaggattatcattggcatgataatttatcaatcaagagaaacagatcacctataggggatagttct |
281 |
Q |
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| T |
10343009 |
caccactactactattagtagtagttgtactatgaattatgatcagtgacatgataatttattgattaagagaagtagatcacttagaggtgagagttat |
10343108 |
T |
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| Q |
282 |
agtcaaggttcacaag |
297 |
Q |
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||| || ||||||||| |
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| T |
10343109 |
agttaatgttcacaag |
10343124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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