View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20020_high_15 (Length: 303)
Name: NF20020_high_15
Description: NF20020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20020_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 50276091 - 50275804
Alignment:
| Q |
1 |
taaaccttcaggttcgatagcatttgatatggactatgctcgttgggtagatgagcatcaacgactaatcaatgacataagatcagctataaattctcaa |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50276091 |
taaaccttcaggttcggtagcatttgatatggactatgctcgttgggtagacgagcatcaacgactaatcaatgacataagatcagctataaattctcaa |
50275992 |
T |
|
| Q |
101 |
atgggcgataatgaactgcatcttcttgttgatggtgtcatggtacattatgatgaattatacaagttgaagagcataggtgcaaaggctgatgtatttc |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50275991 |
atgggtgataatgaactgcatcttcttgttgatggtgtcatggtacattatgatgaattatacaagttgaagagcataggtgcaaaggctgatgtatttc |
50275892 |
T |
|
| Q |
201 |
acatactttctgggttgtggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccgaacttctcaaggtgat |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50275891 |
acatactttctgggttgtggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccgaacttctcaaggtgat |
50275804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 50280115 - 50279828
Alignment:
| Q |
1 |
taaaccttcaggttcgatagcatttgatatggactatgctcgttgggtagatgagcatcaacgactaatcaatgacataagatcagctataaattctcaa |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50280115 |
taaaccttcaggttcggtagcatttgatatggactatgctcgttgggtagacgagcatcaacgactaatcaatgacataagatcagctataaattctcaa |
50280016 |
T |
|
| Q |
101 |
atgggcgataatgaactgcatcttcttgttgatggtgtcatggtacattatgatgaattatacaagttgaagagcataggtgcaaaggctgatgtatttc |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50280015 |
atgggtgataatgaactgcatcttcttgttgatggtgtcatggtacattatgatgaattatacaagttgaagagcataggtgcaaaggctgatgtatttc |
50279916 |
T |
|
| Q |
201 |
acatactttctgggttgtggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccgaacttctcaaggtgat |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50279915 |
acatactttctgggttgtggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccgaacttctcaaggtgat |
50279828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 50287759 - 50287709
Alignment:
| Q |
1 |
taaaccttcaggttcgatagcatttgatatggactatgctcgttgggtaga |
51 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
50287759 |
taaaccttcaggttcggtagcatttgatatggactatgctcgttgggtaga |
50287709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 14462389 - 14462668
Alignment:
| Q |
1 |
taaaccttcaggttcgatagcatttgatatggactatgctcgttgggtagatgagcatcaacgactaatcaatgacataagatcagctataaattctcaa |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
14462389 |
taaaccttcaggttcggtagcatttgatatggactatgctcgttgggtagatgagcatgaacgacaaatcaatgacataagatcagctataaattctcaa |
14462488 |
T |
|
| Q |
101 |
atgggcgataatgaactgcatctt---cttgttgatggtgtcatggtacattatgatgaattatacaagttgaagagcataggtgcaaaggctgatgtat |
197 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14462489 |
atgggcgataatgaactgcatcttcttcttgttgatggtgtcatggtacattatgatgaattatacaagttgaagagcataggtgcaaaggctgatgtat |
14462588 |
T |
|
| Q |
198 |
ttcacatactttctgggttgtggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccgaactt |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14462589 |
ttcacatactttctgggttgtggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccgaactt |
14462668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 22610014 - 22610283
Alignment:
| Q |
18 |
tagcatttgatatggactatgctcgttgggtagatgagcatcaacgactaatcaatgacataagatcagctataaattctcaaatgggcgataatgaact |
117 |
Q |
| |
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|||||||||| ||||| || | | |||||| || ||||||||||| | ||||||| ||||||| || |||||||||||||||| ||||||||| | |
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| T |
22610014 |
tagcatttgacatggaatacacccattgggttgacgagcatcaacgtatgctcaatgatctaagatcggcgttaaattctcaaatgggtgataatgaatt |
22610113 |
T |
|
| Q |
118 |
gcatcttcttgttgatggtgtcatggtacattatgatgaattatacaagttgaagagcataggtgcaaaggctgatgtatttcacatactttctgggttg |
217 |
Q |
| |
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|||||| ||||| |||||||| ||| |||| || |||| |||| | ||| ||||||||||| |||||| |||||||||||||||| || | ||||||| |
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| T |
22610114 |
gcatctgcttgtcgatggtgttatgtcacatcataatgagttatttaggttaaagagcataggggcaaagactgatgtatttcacatgctctatgggttg |
22610213 |
T |
|
| Q |
218 |
tggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccgaacttctcaaggtga |
287 |
Q |
| |
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||||||||||| | |||||||| ||| || |||| ||||| ||| |||||||| ||| |||||||||||| |
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| T |
22610214 |
tggaagacaccagtagaaagattttttatttggcatggtgcatttcgttcatctgaaattctcaaggtga |
22610283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 216 - 287
Target Start/End: Original strand, 14931420 - 14931491
Alignment:
| Q |
216 |
tgtggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccgaacttctcaaggtga |
287 |
Q |
| |
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||||||| |||||||| ||||| |||||| | ||||||||||| || || || || |||||||||||||||| |
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| T |
14931420 |
tgtggaaaacacctgctgaaaggtgtttcttatggcttggtggttttcggtcgtctgaacttctcaaggtga |
14931491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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