View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20020_high_21 (Length: 270)
Name: NF20020_high_21
Description: NF20020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20020_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 55 - 261
Target Start/End: Complemental strand, 55898698 - 55898503
Alignment:
| Q |
55 |
acatttatcaatttgacttatgtttattatttaaaatactaatttcctattcatttgaaaggtcatactcacgagtgttttaaaaacattgtttaataaa |
154 |
Q |
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| T |
55898698 |
acatttatcaatttgattaatgtttattatttaaaatactaatttcctattcatttgaaaggtcatactcacaagtgttttaaaaacattgtttaataaa |
55898599 |
T |
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| Q |
155 |
acttatgaaactaatacatacataattttcaatgtannnnnnnaatttcttaaataatgcgttacgtacacttgttaatattattattttttgactaagc |
254 |
Q |
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| T |
55898598 |
acttatgaaactaatacatacataattttcaatgtat--------tttttt---taatgcgttaagtacacttgttaatattattattttttgactaagc |
55898510 |
T |
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