View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20020_high_3 (Length: 570)
Name: NF20020_high_3
Description: NF20020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20020_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 454; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 19 - 562
Target Start/End: Original strand, 21834014 - 21834552
Alignment:
| Q |
19 |
aaaaccatcttcatccttatcgatgaggctgaaatacgcctttatctttgatatttgattgtgattgagttgatcggtcattgaaggaagattaggttct |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
21834014 |
aaaaccatcttcatccttatcgatgaggctgaaatacgcctttatctttgatatttgattgtgattgagttgatcggccattgaaggaagattgggttct |
21834113 |
T |
|
| Q |
119 |
gcaaaagtgcaaagagaagatgagaatgatttgtatgtgtaatgtgaaaaatccattttctaaaataacaacacaaatatctaaatggtgcaatacaaat |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
21834114 |
gcaaaagtgcaaagagaagatgagaatgatttgtatgtgtaatttgaaaaatccattttctaaaataacaacacaaatatctaaa-ggtgcaatacaaat |
21834212 |
T |
|
| Q |
219 |
gtgtgtaacgtgaaaaatccgtttactctataacaccttatgacacgtaatagagctcgacattgatggtttgttactctgtaaccaagcttataaaacg |
318 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21834213 |
gtgt--aacgtgaaaaatccgtttactcta--acaccttatgacacgtaatagagctcgacattgatggtttgttactctgtaaccaagcttataaaacg |
21834308 |
T |
|
| Q |
319 |
accccttcagcgcaaaagcaaagtacatgcaatgtatactaaaaactatcattttttgcactcatactgatttgaatgtcgaaatatttacatgtacccc |
418 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21834309 |
accccttcagcacaaaagcaaagtacacgcaatgtatactaaaaactatcattttttgcactcatactgatttgaatgtcgaaatatttacatgtacccc |
21834408 |
T |
|
| Q |
419 |
taacttaaatttcgacggttgttattgtcggacgccatcattatggtaaaaaaggatcaagcatannnnnnnnnnnnaagttatatgtttcactttagct |
518 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
21834409 |
taacttaaattttgacggttgttattgtcggacgccatcattatggtaaaaaaggatcaagcatatttttcttttttaagttatatgtttcactttagct |
21834508 |
T |
|
| Q |
519 |
atattaaatttgttgtcatactcctttttcttctctttcatctc |
562 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21834509 |
atattaaatttgttgtcatactcctttttcttctctttcatctc |
21834552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 24 - 561
Target Start/End: Original strand, 21859024 - 21859566
Alignment:
| Q |
24 |
catcttcatccttatcgatgaggctgaaatacgcctttatctttgatatttgattgtgattgagttgatcggtcattgaaggaagattaggttctgcaaa |
123 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
21859024 |
catctccatccttatcgatgaggctgaaatacgcctttatctttgagatttgcttgtcattgagttgatcggccattgaaggaagattgggttctgcaaa |
21859123 |
T |
|
| Q |
124 |
agtgcaaagagaagatgagaatgatttgtatgtgtaatgtgaaaaatccattttctaaaataacaacacaaatatctaaatggtgcaatacaaatgtgtg |
223 |
Q |
| |
|
||| ||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
21859124 |
agtacaaagagaaaatgataatgatttgtatgtgtaatgtgaaaaatccatttcctaaaataactacacaaatatctaaatggtgcaatacaaatgtgtg |
21859223 |
T |
|
| Q |
224 |
taacgtgaaaaatccgtttactctataacaccttatgacacgtaa----tagagctcgacattgatggtttgttactctgtaaccaagcttataaaacga |
319 |
Q |
| |
|
||| |||||||||| ||||||| |||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
21859224 |
taaagtgaaaaatctatttactccttaacacctcatgacatgtaacagttagagctcgacattgatggtttgttactctgtaaccaagtatataaaagag |
21859323 |
T |
|
| Q |
320 |
ccccttcagcgcaaaagcaaagtacatgcaatgtatactaaaaactatcattttttgcactcatactgatttgaatgtcgaaatatttacatgta-cccc |
418 |
Q |
| |
|
|||||||||| |||||| |||||||| ||| || |||||||||| ||| |||||||||||||||| | ||||||||| ||||||||||||||| |||| |
|
|
| T |
21859324 |
ccccttcagcacaaaagaaaagtacacaaaatataaactaaaaactctcaatttttgcactcatacttacttgaatgtctaaatatttacatgtaccccc |
21859423 |
T |
|
| Q |
419 |
taacttaaatttcgacggttgttattgtcggacgccatcattatggtaaaaaaggatcaagcatannnnnnnnnnnnaagttatatgtttcactttagct |
518 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||||||||||| ||||| ||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
21859424 |
taacttacatttcgacggttgttattgtcggacaccatcattatggtcaaaaaagatcatgcataattttcttttttaagttatatgtttcactttagct |
21859523 |
T |
|
| Q |
519 |
atattaaatttgttgtcatactcctttttcttctctttcatct |
561 |
Q |
| |
|
|||||||||| |||||| ||||||||| ||||||||| ||||| |
|
|
| T |
21859524 |
atattaaattcgttgtcctactcctttctcttctcttccatct |
21859566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 24 - 554
Target Start/End: Original strand, 21843383 - 21843917
Alignment:
| Q |
24 |
catcttcatccttatcgatgaggctgaaatacgcctttatctttgatatttgattgtgattgagttgatcggtcattgaaggaagattaggttctgcaaa |
123 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
21843383 |
catctccatccttatcgatgaggctgaaatacgcctttatctttgagatttgcttgtcattgagttgatcggccattgaaggaagattgggttctgcaaa |
21843482 |
T |
|
| Q |
124 |
agtgcaaagagaagatgagaatgatttgtatgtgtaatgtgaaaaatccattttctaaaataacaacacaaatatctaaatggtgcaatacaaatgtgtg |
223 |
Q |
| |
|
||| |||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
21843483 |
agtacaaagagaagatgataatgatttgtgtgtgtaatgtgaaaaatccatttcctaaaataactacacaaatatctaaatggtgcaatacaaatgtgtg |
21843582 |
T |
|
| Q |
224 |
taacgtgaaaaatccgtttactctataacaccttatgacacgtaa----tagagctcgacattgatggtttgttactctgtaaccaagcttataaaacga |
319 |
Q |
| |
|
||| ||||||||||| ||| ||| |||||||| |||||| |||| |||||||||||||| |||||||||||||||||||||||| ||||||| | |
|
|
| T |
21843583 |
taaagtgaaaaatccatttgctccttaacacctcatgacatgtaacagttagagctcgacattcatggtttgttactctgtaaccaagtatataaaaag- |
21843681 |
T |
|
| Q |
320 |
ccccttcagcgcaaaagcaaagtacatgcaatgtatactaaaaactatcattttttgcactcatactgatttgaatgtcgaaatatttacatgta-cccc |
418 |
Q |
| |
|
|||||| ||| || || |||||||| |||| || |||||||||| |||||||||||||| ||||| | ||||||||| ||||||||||||||| |||| |
|
|
| T |
21843682 |
cccctttagcacagaacaaaagtacacacaatataaactaaaaactctcattttttgcacttatacttacttgaatgtctaaatatttacatgtaccccc |
21843781 |
T |
|
| Q |
419 |
taacttaaatttcgacggttgttattgtcggacgccatcattatggtaaaaaaggatcaagcatannnnnnnnnnnnaagttatatgtttcactttagct |
518 |
Q |
| |
|
||||||| ||||||||||| ||||||||| ||||||||||||||||| ||||| ||||| ||||| |||||||||||||||||||||| |
|
|
| T |
21843782 |
taacttacatttcgacggtcgttattgtcagacgccatcattatggtcaaaaaagatcatgcataatttccttttttgagttatatgtttcactttagct |
21843881 |
T |
|
| Q |
519 |
atattaaatttgttgtcatactcctttttcttctct |
554 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
21843882 |
atattaaatttgttgtcctactcctttctcttctct |
21843917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 25 - 448
Target Start/End: Original strand, 21854530 - 21854947
Alignment:
| Q |
25 |
atcttcatccttatcgatgaggctgaaatacgcctttatctttgatatttgattgtgattgagttgatcggtcattgaaggaagattaggttctgcaaaa |
124 |
Q |
| |
|
||||| ||||||||||| || ||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
21854530 |
atcttgatccttatcgagaagtctgaaatacgcctttatctttgagatttgcttgtcattgagttgatcggtcattgaaggaagattgggttctgcaaaa |
21854629 |
T |
|
| Q |
125 |
gtgcaaagagaagatgagaatgatttgtatgtgtaatgtgaaaaatccattttctaaaataacaacacaaatatctaaatggtgcaatacaaatgtgtgt |
224 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
21854630 |
gtacaaagagaagatgagaatgatttgtatgtgtaatgtgaaaaatccatttcctaaaataactacccaaatatctaaatggtgcaatacaaatgtgtgt |
21854729 |
T |
|
| Q |
225 |
aacgtgaaaaatccgtttactctataacaccttatgacacgtaatagagctcgacattgatggtttgttactctgtaaccaagcttataaaacgacccct |
324 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| |
|
|
| T |
21854730 |
------aaaaatccgtttactctataacacctcatgacacgtaatagagctcgacattgatggttcgttaatctgtaaccaagcttataaaaggacccct |
21854823 |
T |
|
| Q |
325 |
tcagcgcaaaagcaaagtacatgcaatgtatactaaaaactatcattttttgcactcatactgatttgaatgtcgaaatatttacatgtacccctaactt |
424 |
Q |
| |
|
||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| || |||||| |
|
|
| T |
21854824 |
tcagcacaaaaataaagtacacacaatgtatactaaaaactatcattttttgcactcatactgatttgaatgtataaatattttcatgtaaccttaactt |
21854923 |
T |
|
| Q |
425 |
aaatttcgacggttgttattgtcg |
448 |
Q |
| |
|
| | |||||||||||||| ||||| |
|
|
| T |
21854924 |
agacttcgacggttgttaatgtcg |
21854947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 21 - 156
Target Start/End: Original strand, 21826566 - 21826701
Alignment:
| Q |
21 |
aaccatcttcatccttatcgatgaggctgaaatacgcctttatctttgatatttgattgtgattgagttgatcggtcattgaaggaagattaggttctgc |
120 |
Q |
| |
|
|||||||| |||||||||||| |||| ||||| | ||| | || ||| | ||| |||| ||||||||||||| ||||| ||||||||| |||||||| |
|
|
| T |
21826566 |
aaccatctccatccttatcgaagaggttgaaagccttcttaaactctgaaacttgtttgtcattgagttgatcgtccattggaggaagatttggttctgc |
21826665 |
T |
|
| Q |
121 |
aaaagtgcaaagagaagatgagaatgatttgtatgt |
156 |
Q |
| |
|
| ||| |||||||||| ||||||||||||||||| |
|
|
| T |
21826666 |
agaagcaaaaagagaagaggagaatgatttgtatgt |
21826701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University