View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20020_low_1 (Length: 667)
Name: NF20020_low_1
Description: NF20020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20020_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 493; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 78 - 620
Target Start/End: Complemental strand, 43989854 - 43989312
Alignment:
| Q |
78 |
gccttgatgatggttttactatagttgcttctggttagttatcgacttcttgtgtctgcaaagattactggctgctgctttttgtaatagactgcttctt |
177 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43989854 |
gccttgatgatggttttactatagttgcttctggttagttatcgacttcttgtgtctgcaaagattactggctgctgctttttgtaatagactgcttctt |
43989755 |
T |
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| Q |
178 |
aattacttgctggtagtgagtgacgtcgacccagatgatgaattcattgaacctgacaaaccaactcaactggtaaattacctgttgtttattagttcga |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43989754 |
aattacttgctggtagtgagtgacgtcgacccagatgatgaattcattgaacctgacaaaccaactcaactggtaaattacctgttgtttattagttcga |
43989655 |
T |
|
| Q |
278 |
gtcaaaaccaaatccaaactgtcaagaaccaaaaacaataggttcaggtgacaannnnnnnctattgtaaatcgaccacccggtaaacaaacccaaggag |
377 |
Q |
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| T |
43989654 |
gtcaaaaccaaatccaaactgtcaagaaccaaaaacaataggttcaggtgacaatttttttctattgtaaatcgactacccggtaaacaaacccaaggag |
43989555 |
T |
|
| Q |
378 |
acatgtttcttaaaagatacttcttatgtaagtaacccgtgtctcagcnnnnnnngaattcctcatgttttagagcccattgtcatattgtcctcggttg |
477 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43989554 |
acatgtttcttaaaagatacttcttatgtaagtaacccgtgtctcagcaaaaaaagaattcctcatgttttagagcccattgtcatattgtcctcggttg |
43989455 |
T |
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| Q |
478 |
ccttgttctccttctttgacttacgatcatgtcgtcccacaccttttccttattcttcttctctgttcaattcgttctctttcgccactgtccatggtca |
577 |
Q |
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| T |
43989454 |
ccttgttctccttctttgacttacgatcatgtcgtcccacaccttttccttattcttcttctctgttcaattcgttctctttcgccactgtccatggtca |
43989355 |
T |
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| Q |
578 |
ctatgtctgcgccgtccactccttctttgtcgcttcttctctc |
620 |
Q |
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| T |
43989354 |
ctgtgtctgcgccgtccactccttctttgtcgcttcttctctc |
43989312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 42415955 - 42416023
Alignment:
| Q |
103 |
tgcttctggttagttatcgacttcttgtgtctgcaaagattactggctgctgctttttgtaatagactg |
171 |
Q |
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| T |
42415955 |
tgcttctagttaattatcgacttgtcatgtctgcaaagactactggctgctgctttttgtaatagactg |
42416023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 476 - 538
Target Start/End: Original strand, 43918528 - 43918590
Alignment:
| Q |
476 |
tgccttgttctccttctttgacttacgatcatgtcgtcccacaccttttccttattcttcttc |
538 |
Q |
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| T |
43918528 |
tgccttcttctcctccttcgacctacgatcatgtcgtcccatgccttctccttattcttcttc |
43918590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 109 - 192
Target Start/End: Original strand, 43918156 - 43918237
Alignment:
| Q |
109 |
tggttagttatcgacttcttgtgtctgcaaagattactggctgctgctttttgtaatagactgcttcttaattacttgctggta |
192 |
Q |
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|||||||||||||||||||||||||||||| ||| | ||| ||| |||||| |||||||||| |||||||||||||||| |
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| T |
43918156 |
tggttagttatcgacttcttgtgtctgcaatgatga--agctcagacttcttgtaaaagactgcttcataattacttgctggta |
43918237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 43989912 - 43989880
Alignment:
| Q |
20 |
gtagctggagagcaaattgggtgtgtgatgtta |
52 |
Q |
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| T |
43989912 |
gtagctggagagcaaattgggtgtgtgatgtta |
43989880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 44003356 - 44003300
Alignment:
| Q |
137 |
aaagattactggctgctgctttttgtaatagactgcttcttaattacttgctggtag |
193 |
Q |
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||||| ||||||||| |||||||| ||| |||||||| | ||||||||||| ||||| |
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| T |
44003356 |
aaagactactggctgatgctttttataacagactgctgcataattacttgcgggtag |
44003300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 103 - 194
Target Start/End: Complemental strand, 8831268 - 8831177
Alignment:
| Q |
103 |
tgcttctggttagttatcgacttcttgtgtctgcaaagattactggctgctgctttttgtaatagactgcttcttaattacttgctggtagt |
194 |
Q |
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| T |
8831268 |
tgcttttggttagttattgacttcttgtgtctacaaagactactggctgctgccttttgtaataggctgctgcataattactcgctggtagt |
8831177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 250 - 330
Target Start/End: Complemental strand, 8831116 - 8831036
Alignment:
| Q |
250 |
gtaaattacctgttgtttattagttcgagtcaaaaccaaatccaaactgtcaagaaccaaaaacaataggttcaggtgaca |
330 |
Q |
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|||||| ||| |||||||||| ||||| |||||||||| || ||| |||||||||||||| ||||||||| || |||||| |
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| T |
8831116 |
gtaaatcacccgttgtttattggttcgggtcaaaaccagattgaaattgtcaagaaccaaacacaataggtacatgtgaca |
8831036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 194
Target Start/End: Complemental strand, 45094813 - 45094744
Alignment:
| Q |
127 |
ttgtgtctgcaaagattactggctgctgctttttg--taatagactgcttcttaattacttgctggtagt |
194 |
Q |
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|||||||||||||| ||||||||||||||||||| |||||||||||| | ||||| |||||||||||| |
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| T |
45094813 |
ttgtgtctgcaaagtctactggctgctgctttttgcctaatagactgctgcataattccttgctggtagt |
45094744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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