View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20020_low_10 (Length: 396)
Name: NF20020_low_10
Description: NF20020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20020_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 35074007 - 35074235
Alignment:
| Q |
1 |
tttttgttgcataatttgtcttcccaatttgttctgctgtggcttggtgcattgatttattttttgttgaaattcctgaattttgaatggtattgtattg |
100 |
Q |
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| T |
35074007 |
tttttgttgcataatttgtcttcccaatttgttctgctgtggcttggtgcattgacttattttttgttgaaattcctgaattttgaatggtattgtattg |
35074106 |
T |
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| Q |
101 |
aatcaaccagctataaaattcaaagtgtaaaatgtggtaaatgttgttcacctttgctgtcttatctaattttaagtgttacattataacatatgcttca |
200 |
Q |
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| T |
35074107 |
aatcaaccagctataaaattcacagtgtaaaatgtggtaaatgttgttcacctttgctgtcttatctaattttaagtgttacattataacatatgcttca |
35074206 |
T |
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| Q |
201 |
ttcttgttgcattgtgtgtgattgattcc |
229 |
Q |
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| T |
35074207 |
ttcttgttgcattgtgtgtgattgattcc |
35074235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 275 - 379
Target Start/End: Original strand, 35074281 - 35074385
Alignment:
| Q |
275 |
gtttcttgtagctaccggaagagtgacaaccaaagtggatgtttacgcatttggagtagttttgatggaactgatcacaggtcgaaaggcattagatgat |
374 |
Q |
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| T |
35074281 |
gtttcttgtagctactggaagagtgacaaccaaagtggatgtttacgcatttggagtagttttgatggaactgatcacaggtcgaaaggcattagatgat |
35074380 |
T |
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| Q |
375 |
tctgt |
379 |
Q |
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||||| |
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| T |
35074381 |
tctgt |
35074385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 291 - 374
Target Start/End: Complemental strand, 38159013 - 38158930
Alignment:
| Q |
291 |
ggaagagtgacaaccaaagtggatgtttacgcatttggagtagttttgatggaactgatcacaggtcgaaaggcattagatgat |
374 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| || ||| ||| ||||||||||||| |
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| T |
38159013 |
ggaagagtgacaaccaaagtagatgtttacgcatttggagtagttctgatggaactgattactggtagaagggcattagatgat |
38158930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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