View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20020_low_11 (Length: 369)
Name: NF20020_low_11
Description: NF20020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20020_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 20 - 362
Target Start/End: Original strand, 43106019 - 43106359
Alignment:
| Q |
20 |
acctattggtaccaaattcgtaaataagagaaaatagagtgatttttactttttatatggcacgggacataaaaatttgattctcgttggggatgaggat |
119 |
Q |
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| T |
43106019 |
acctattggtaccaaattcgtaaataagagaaaatagagtgatttttactttttatatggcaagggacataaaaatttgattctcgttggggatgaggat |
43106118 |
T |
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| Q |
120 |
gataatacaaattctaactcatgaaaaacatatacaannnnnnnccggatattcagtggccggaatggtgagctaaaattcacctcacccaccgcactgc |
219 |
Q |
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| T |
43106119 |
gataatacaaattctaactcatgaaaaacatatacaatttttttccggatattcaatggccggaatggtgacctaaaattcacctcacccaccgcactgc |
43106218 |
T |
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| Q |
220 |
catacctaac---tgtaccaaattcataaataagagaaaatagagtgatcaagacaaaatttgatgttttttgttttctttcaatactcatgatatgata |
316 |
Q |
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| T |
43106219 |
catacctaactcatgtaccaaattcataaataagaaaaaatagagtgatcaagataaaatttgatgttttttgttttctttcaatactc-----atgata |
43106313 |
T |
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| Q |
317 |
tgagacatattttaactagaagcaaatttcaacagttcttcatctc |
362 |
Q |
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| T |
43106314 |
tgagacatattttaactagaagcaaatttcaacagttcttcatctc |
43106359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 62 - 265
Target Start/End: Original strand, 43105852 - 43106061
Alignment:
| Q |
62 |
tttttactttttatatggcacgggacataaaaatttgattctcgttggggatgaggatgataatac---aaattctaactca--tgaaaaacatatacaa |
156 |
Q |
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| T |
43105852 |
tttttaatttttatatggcaagggacataaatgttcgattctcgttggggatgaggatgataataagataaattctaactcaaatgaaaaatatgtacaa |
43105951 |
T |
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| Q |
157 |
nnnnnnncc-ggatattcagtggccggaatggtgagctaaaattcacctcacccaccgcactgccatacctaactgtaccaaattcataaataagagaaa |
255 |
Q |
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| T |
43105952 |
atttttttcaggatattcggtggcccgagtagtgagctaaaactcacctcacccgccgcgttgccatacctattggtaccaaattcgtaaataagagaaa |
43106051 |
T |
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| Q |
256 |
atagagtgat |
265 |
Q |
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| T |
43106052 |
atagagtgat |
43106061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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