View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20020_low_16 (Length: 312)
Name: NF20020_low_16
Description: NF20020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20020_low_16 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 27792831 - 27792520
Alignment:
| Q |
1 |
ttaaatttgttgaatatattatttaggatttgacatatagtctctatagagtcatagttaacgttggagtaagaactgaggagtctatcgctcttgcaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27792831 |
ttaaatttgttgaatatattatttaggatttgacatatagtctctatagagtcatagttaacgttggagtaagaactgaggagtctatcgctcttgcaat |
27792732 |
T |
|
| Q |
101 |
ctgttaatcactgtgatacacatggagatgggtaataattttgacttcttaggccttaaatattcgataactaccgtagaagaacctcgttgaacttttg |
200 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27792731 |
ctgttaatcaatgtgatacgcatggagatgggtaataattttgacttcttaggccttaaatattcgataactaccttagaagaacctcgttgaactttta |
27792632 |
T |
|
| Q |
201 |
ttaagtgttgctcgtactaatgtgacagcctgcacctttggccttctatttccatccctccctcccttttccttcnnnnnnncattttccccaaaacttg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
27792631 |
ttaagtgttgctcgtactaatgtgacagcctgcacctttggccttctatttccatccctccctcccttttccttcaaaaaaacattttccccaaaacttg |
27792532 |
T |
|
| Q |
301 |
tagcagcatatt |
312 |
Q |
| |
|
|||||||||||| |
|
|
| T |
27792531 |
tagcagcatatt |
27792520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University