View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20020_low_18 (Length: 277)

Name: NF20020_low_18
Description: NF20020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20020_low_18
NF20020_low_18
[»] chr4 (1 HSPs)
chr4 (188-261)||(48991641-48991714)
[»] chr3 (2 HSPs)
chr3 (4-55)||(6798918-6798970)
chr3 (171-238)||(6798611-6798681)


Alignment Details
Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 188 - 261
Target Start/End: Original strand, 48991641 - 48991714
Alignment:
Q  188 gtttcggattatcaacaattttataattgaggcactcactccttcattttaacatctcatacaaagatcctaat 261  Q
    |||||||||||||||||||||| || |||| |||| |||| |||||||||||||||||||||||||||||||||    
T  48991641 gtttcggattatcaacaattttctagttgacgcacccacttcttcattttaacatctcatacaaagatcctaat 48991714  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 6798970 - 6798918
Alignment:
Q  4 ccttgttcagaaatacttctatgcattgtgtccct-ttttaagtgttcatacc 55  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6798970 ccttgttcagaaatacttctatgcattgtgtcccttttttaagtgttcatacc 6798918  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 238
Target Start/End: Complemental strand, 6798681 - 6798611
Alignment:
Q  171 gaagaactcatgcaatt---gtttcggattatcaacaattttataattgaggcactcactccttcatttta 238  Q
    |||||||||||||||||   ||||||||||||||||| |||| |||||||||||| |||| ||| ||||||    
T  6798681 gaagaactcatgcaatttgagtttcggattatcaacagttttctaattgaggcacccactgctttatttta 6798611  T

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