View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20020_low_19 (Length: 276)

Name: NF20020_low_19
Description: NF20020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20020_low_19
NF20020_low_19
[»] chr4 (5 HSPs)
chr4 (18-267)||(51212978-51213227)
chr4 (90-250)||(29936938-29937098)
chr4 (90-250)||(51145952-51146112)
chr4 (90-250)||(51157074-51157234)
chr4 (88-250)||(51199886-51200048)
[»] chr3 (2 HSPs)
chr3 (56-267)||(49736820-49737031)
chr3 (140-246)||(36286309-36286415)
[»] chr1 (2 HSPs)
chr1 (152-264)||(38525248-38525360)
chr1 (152-252)||(38566397-38566497)
[»] chr7 (1 HSPs)
chr7 (124-216)||(41176825-41176917)
[»] chr2 (2 HSPs)
chr2 (125-216)||(5823503-5823594)
chr2 (125-216)||(5832006-5832097)
[»] chr6 (2 HSPs)
chr6 (125-216)||(29329534-29329625)
chr6 (134-235)||(33788351-33788452)


Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 51212978 - 51213227
Alignment:
Q  18 tttatagtatatattttttcattaaatttaaatgtcctttttaccttactagtactggaaaattattgatttagggacttgaaacgatggtcggcgagca 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  51212978 tttatagtatatattttttcattaaatttaaatgtcctttttaccttactagtactggaaaattattgatttagggacttgaaacgatggtcggtgagca 51213077  T
Q  118 tggagcacaactctctggaggccaaaagcaaagaattgctatagcaagagcaattctgaaagatccaagaattctactccttgatgaagcaacaagtgcc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51213078 tggagcacaactctctggaggccaaaagcaaagaattgctatagcaagagcaattctgaaagatccaagaattctactccttgatgaagcaacaagtgcc 51213177  T
Q  218 cttgatgcagaatctgaaagagtagtacaagagaccctggacagaattat 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51213178 cttgatgcagaatctgaaagagtagtacaagagaccctggacagaattat 51213227  T

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Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 90 - 250
Target Start/End: Complemental strand, 29937098 - 29936938
Alignment:
Q  90 agggacttgaaacgatggtcggcgagcatggagcacaactctctggaggccaaaagcaaagaattgctatagcaagagcaattctgaaagatccaagaat 189  Q
    ||||||| || |||||||| || |||||||||  ||||||||||||||| |||||||||||| |||| || |||||||||||| ||||||| ||||||||    
T  29937098 agggactagacacgatggttggtgagcatggaatacaactctctggaggacaaaagcaaagagttgcaattgcaagagcaattttgaaagacccaagaat 29936999  T
Q  190 tctactccttgatgaagcaacaagtgcccttgatgcagaatctgaaagagtagtacaagag 250  Q
      |||| ||||||||||| |||||||||||||||||||||||||| ||| | |||||||||    
T  29936998 cttacttcttgatgaagctacaagtgcccttgatgcagaatctgagagaattgtacaagag 29936938  T

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Target: chr4; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 90 - 250
Target Start/End: Original strand, 51145952 - 51146112
Alignment:
Q  90 agggacttgaaacgatggtcggcgagcatggagcacaactctctggaggccaaaagcaaagaattgctatagcaagagcaattctgaaagatccaagaat 189  Q
    ||||||| || || ||||| || ||||||||| | || ||||||||||| |||||||| ||| |||| || |||||||||||| ||||||||||||||||    
T  51145952 agggactagacacaatggttggtgagcatggaacgcagctctctggaggtcaaaagcagagagttgcaattgcaagagcaattttgaaagatccaagaat 51146051  T
Q  190 tctactccttgatgaagcaacaagtgcccttgatgcagaatctgaaagagtagtacaagag 250  Q
     ||||| ||||||||||| |||||||||||||||||||||||||| ||| | |||||||||    
T  51146052 cctacttcttgatgaagctacaagtgcccttgatgcagaatctgagagaattgtacaagag 51146112  T

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Target: chr4; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 90 - 250
Target Start/End: Original strand, 51157074 - 51157234
Alignment:
Q  90 agggacttgaaacgatggtcggcgagcatggagcacaactctctggaggccaaaagcaaagaattgctatagcaagagcaattctgaaagatccaagaat 189  Q
    ||||||| || || ||||| || ||||||||| |||| ||||||||||| |||||||||||| |||| || |||||||||||| ||||||| || |||||    
T  51157074 agggactagacacaatggttggtgagcatggaacacagctctctggaggtcaaaagcaaagagttgcaattgcaagagcaattttgaaagacccgagaat 51157173  T
Q  190 tctactccttgatgaagcaacaagtgcccttgatgcagaatctgaaagagtagtacaagag 250  Q
     ||||| ||||||||||| |||||||||||||||||||||||||| ||| | |||||||||    
T  51157174 cctacttcttgatgaagctacaagtgcccttgatgcagaatctgagagaattgtacaagag 51157234  T

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Target: chr4; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 88 - 250
Target Start/End: Original strand, 51199886 - 51200048
Alignment:
Q  88 ttagggacttgaaacgatggtcggcgagcatggagcacaactctctggaggccaaaagcaaagaattgctatagcaagagcaattctgaaagatccaaga 187  Q
    ||||||||| || || ||||| || ||||||||| | || |||||||| || |||||||| ||| |||| ||||||||||| ||||||||||||||||||    
T  51199886 ttagggactagacacaatggttggtgagcatggaactcagctctctgggggacaaaagcagagagttgcaatagcaagagcgattctgaaagatccaaga 51199985  T
Q  188 attctactccttgatgaagcaacaagtgcccttgatgcagaatctgaaagagtagtacaagag 250  Q
    ||  |||| || |||||||| |||||||| |||||||| |||||||| ||| | |||||||||    
T  51199986 atattacttctcgatgaagctacaagtgcgcttgatgctgaatctgagagaattgtacaagag 51200048  T

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Target: chr3 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 56 - 267
Target Start/End: Complemental strand, 49737031 - 49736820
Alignment:
Q  56 ttttaccttactagtactggaaaattattgatttagggacttgaaacgatggtcggcgagcatggagcacaactctctggaggccaaaagcaaagaattg 155  Q
    |||||||||| |||| |  |||||||||| |||||||||||||| |||||||| ||||| |||||||| ||||| ||||||||||||||||||||||| |    
T  49737031 ttttaccttattagttcatgaaaattattaatttagggacttgacacgatggttggcgaacatggagctcaactttctggaggccaaaagcaaagaatag 49736932  T
Q  156 ctatagcaagagcaattctgaaagatccaagaattctactccttgatgaagcaacaagtgcccttgatgcagaatctgaaagagtagtacaagagaccct 255  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || |||||||| ||||||||||| ||    
T  49736931 ctatagcaagagcaattctgaaagatccaagaattctactcctagatgaagcaacaagtgcccttgacgcagagtcggaaagagtggtacaagagacgct 49736832  T
Q  256 ggacagaattat 267  Q
     || ||||||||    
T  49736831 agaaagaattat 49736820  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 140 - 246
Target Start/End: Original strand, 36286309 - 36286415
Alignment:
Q  140 caaaagcaaagaattgctatagcaagagcaattctgaaagatccaagaattctactccttgatgaagcaacaagtgcccttgatgcagaatctgaaagag 239  Q
    |||||||| ||| |||||||||| ||| ||||| | ||||||||||||||||| || |||||||| || || |||||||||||||  |||||||||| |     
T  36286309 caaaagcagagagttgctatagctagatcaattttaaaagatccaagaattcttcttcttgatgaggctactagtgcccttgatgtggaatctgaaaaaa 36286408  T
Q  240 tagtaca 246  Q
    |||||||    
T  36286409 tagtaca 36286415  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 152 - 264
Target Start/End: Complemental strand, 38525360 - 38525248
Alignment:
Q  152 attgctatagcaagagcaattctgaaagatccaagaattctactccttgatgaagcaacaagtgcccttgatgcagaatctgaaagagtagtacaagaga 251  Q
    ||||| || ||||||||||| || ||  |||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| || || ||||||     
T  38525360 attgcgattgcaagagcaatccttaagaatccaagaattctacttcttgatgaagctacaagtgcacttgatgcagaatctgaaagggtggtgcaagagg 38525261  T
Q  252 ccctggacagaat 264  Q
    | ||||| |||||    
T  38525260 ctctggatagaat 38525248  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 152 - 252
Target Start/End: Complemental strand, 38566497 - 38566397
Alignment:
Q  152 attgctatagcaagagcaattctgaaagatccaagaattctactccttgatgaagcaacaagtgcccttgatgcagaatctgaaagagtagtacaagaga 251  Q
    ||||| || ||||||||||| || ||  ||||||||||| |||| || |||||||| |||||||| ||||||||| |||||||||| |||||||||||||    
T  38566497 attgccattgcaagagcaatacttaagaatccaagaattttacttctagatgaagctacaagtgcacttgatgcaaaatctgaaagggtagtacaagaga 38566398  T
Q  252 c 252  Q
    |    
T  38566397 c 38566397  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 124 - 216
Target Start/End: Complemental strand, 41176917 - 41176825
Alignment:
Q  124 acaactctctggaggccaaaagcaaagaattgctatagcaagagcaattctgaaagatccaagaattctactccttgatgaagcaacaagtgc 216  Q
    |||||| |||||||| ||||| |||||||| || |||||||| ||||| || ||| |||||  |||||| ||||| ||||| |||||||||||    
T  41176917 acaactttctggaggacaaaaacaaagaatagcaatagcaagggcaatgctaaaaaatccagcaattcttctcctcgatgaggcaacaagtgc 41176825  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 216
Target Start/End: Original strand, 5823503 - 5823594
Alignment:
Q  125 caactctctggaggccaaaagcaaagaattgctatagcaagagcaattctgaaagatccaagaattctactccttgatgaagcaacaagtgc 216  Q
    ||||| ||||| || ||||||||||||||||| || ||||| || ||  ||||  |||||||||| || || ||||||||||||||||||||    
T  5823503 caactttctggtggacaaaagcaaagaattgcaattgcaagggccatattgaagaatccaagaatccttcttcttgatgaagcaacaagtgc 5823594  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 216
Target Start/End: Complemental strand, 5832097 - 5832006
Alignment:
Q  125 caactctctggaggccaaaagcaaagaattgctatagcaagagcaattctgaaagatccaagaattctactccttgatgaagcaacaagtgc 216  Q
    ||||| ||||| || ||||||||||||||||| || ||||| |||||  ||||  | |||| ||| || || ||||||||||||||||||||    
T  5832097 caactttctggtggacaaaagcaaagaattgcaattgcaagggcaatattgaagaacccaaaaatccttcttcttgatgaagcaacaagtgc 5832006  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 216
Target Start/End: Complemental strand, 29329625 - 29329534
Alignment:
Q  125 caactctctggaggccaaaagcaaagaattgctatagcaagagcaattctgaaagatccaagaattctactccttgatgaagcaacaagtgc 216  Q
    ||||| |||||||| ||||||||||||||||| || || || |||||  ||||  | || | |||||| || ||||||||||||||||||||    
T  29329625 caactttctggagggcaaaagcaaagaattgcaattgctagggcaatattgaagaaccctaaaattcttcttcttgatgaagcaacaagtgc 29329534  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 235
Target Start/End: Complemental strand, 33788452 - 33788351
Alignment:
Q  134 ggaggccaaaagcaaagaattgctatagcaagagcaattctgaaagatccaagaattctactccttgatgaagcaacaagtgcccttgatgcagaatctg 233  Q
    ||||| |||||||||||||| || || |||||||| ||  | ||| |||||  |||||| || |||||||||||||| ||||| |||||  | |||||||    
T  33788452 ggaggacaaaagcaaagaatagccattgcaagagctatcataaaaaatccagtaattcttctgcttgatgaagcaactagtgcacttgactctgaatctg 33788353  T
Q  234 aa 235  Q
    ||    
T  33788352 aa 33788351  T

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