View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20020_low_21 (Length: 272)
Name: NF20020_low_21
Description: NF20020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20020_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 21 - 265
Target Start/End: Original strand, 49207749 - 49207993
Alignment:
| Q |
21 |
atacctgcaatgtgcaaacagaatctgttgctgaaaatattgctccaattgctgcattcagtagaataagataaggtaagtgttcatatttgcagataag |
120 |
Q |
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| T |
49207749 |
atacctgcaatgtgcaaacagaatctgttgctgaaaatattgctccaattgctgcattcagtagaataagataaggtaagtgttcatatttgcagataag |
49207848 |
T |
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| Q |
121 |
tccaacattaaactatgagataatcatatatatagtatatacctaaataatctccaatcttgagggaaccaatatctaatttttggaagaagtgtatggc |
220 |
Q |
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| T |
49207849 |
tccaacattaaactatgagataatcatatatatagtatatacctaaataatctccaatcttgagggaaccaatatctaatttttggaagaagtgtatggc |
49207948 |
T |
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| Q |
221 |
acctaggcaaaataataagagataataaatgagttagtattatct |
265 |
Q |
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| T |
49207949 |
acctaggaaaaataataagagataataaatgagttagtattatct |
49207993 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 36489805 - 36489759
Alignment:
| Q |
23 |
acctgcaatgtgcaaacagaatctgttgctgaaaatattgctccaat |
69 |
Q |
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| T |
36489805 |
acctgcaatgtgcaaacggaatctgttgcggcaaatattgctccaat |
36489759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 47136453 - 47136504
Alignment:
| Q |
23 |
acctgcaatgtgcaaacagaatctgttgctgaaaatattgctccaattgctg |
74 |
Q |
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| T |
47136453 |
acctgcaacgtgcacacagaatctgttgcagcaaatattgcaccaattgctg |
47136504 |
T |
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