View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20020_low_25 (Length: 241)
Name: NF20020_low_25
Description: NF20020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20020_low_25 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 44555873 - 44555759
Alignment:
| Q |
18 |
gcaggctatttggctatggaattggaattcacttgctacaggcagaagaccctgaaaatattccaaggaagaacgaaattaatccaaaggataatcatat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44555873 |
gcaggctatttggctatggaattggaattcacttgctacaggcagaagaccctgaaaatattccaaggaagaacgaaattaatccaaaggataatcatat |
44555774 |
T |
|
| Q |
118 |
atcatttcaggcaag |
132 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
44555773 |
atcatttcaggcaag |
44555759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 44546258 - 44546144
Alignment:
| Q |
18 |
gcaggctatttggctatggaattggaattcacttgctacaggcagaagaccctgaaaatattccaaggaagaacgaaattaatccaaaggataatcatat |
117 |
Q |
| |
|
||||| |||||||| |||| ||||| ||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
44546258 |
gcaggttatttggccatggcattggtattcacttgctgaaggcagaagaccctgaaaaaattccaaggaagaaggaaattaatacaaaggataatcatat |
44546159 |
T |
|
| Q |
118 |
atcatttcaggcaag |
132 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
44546158 |
ctcattccaggcaag |
44546144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 241
Target Start/End: Complemental strand, 44555676 - 44555646
Alignment:
| Q |
211 |
tgatgatgacatgacaaagtggttgaattat |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
44555676 |
tgatgatgacatgacaaagtggttgaattat |
44555646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 123
Target Start/End: Original strand, 51845784 - 51845886
Alignment:
| Q |
21 |
ggctatttggctatggaattggaattcacttgctacaggcagaagaccctgaaaatattccaaggaagaacgaaattaatccaaaggataatcatatatc |
120 |
Q |
| |
|
||||||||||| | || ||||||||||| ||||| | |||||| ||||||||||| |||||||||||||| ||||||||| |||||||||| ||||| || |
|
|
| T |
51845784 |
ggctatttggccacgggattggaattcatttgctgctggcagaggaccctgaaaagattccaaggaagaatgaaattaatacaaaggataagcatatctc |
51845883 |
T |
|
| Q |
121 |
att |
123 |
Q |
| |
|
||| |
|
|
| T |
51845884 |
att |
51845886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 2572306 - 2572408
Alignment:
| Q |
18 |
gcaggctatttggctatggaattggaattcacttgctacaggcagaagaccctgaaaatattccaaggaagaacgaaattaatccaaaggataatcatat |
117 |
Q |
| |
|
||||||||||||||||||| ||||| ||||| |||||| | ||||| |||| || | | ||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
2572306 |
gcaggctatttggctatggtattggtattcatttgctagaagcagagaacccagagacgttaccaaggaagaaggaaattaatccaaaggataatcacat |
2572405 |
T |
|
| Q |
118 |
atc |
120 |
Q |
| |
|
||| |
|
|
| T |
2572406 |
atc |
2572408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University