View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20020_low_28 (Length: 239)

Name: NF20020_low_28
Description: NF20020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20020_low_28
NF20020_low_28
[»] chr2 (9 HSPs)
chr2 (92-236)||(17281807-17281951)
chr2 (92-239)||(1895522-1895670)
chr2 (94-237)||(17375391-17375535)
chr2 (92-236)||(1551461-1551605)
chr2 (92-172)||(4140576-4140656)
chr2 (186-236)||(3921684-3921734)
chr2 (99-233)||(4869707-4869839)
chr2 (176-239)||(38531146-38531210)
chr2 (99-198)||(34660352-34660449)
[»] chr4 (5 HSPs)
chr4 (92-239)||(53202378-53202526)
chr4 (92-236)||(47518313-47518458)
chr4 (94-236)||(23054098-23054241)
chr4 (179-239)||(6410103-6410164)
chr4 (195-239)||(24957572-24957616)
[»] chr1 (6 HSPs)
chr1 (100-236)||(34655070-34655207)
chr1 (99-237)||(39708890-39709029)
chr1 (99-239)||(34118084-34118227)
chr1 (99-233)||(615823-615955)
chr1 (173-238)||(11407928-11407994)
chr1 (177-236)||(26236622-26236682)
[»] chr5 (8 HSPs)
chr5 (104-238)||(7766879-7767014)
chr5 (92-236)||(41355408-41355553)
chr5 (99-239)||(27169957-27170099)
chr5 (106-236)||(18697048-18697181)
chr5 (165-232)||(7271893-7271960)
chr5 (99-233)||(6030259-6030391)
chr5 (165-233)||(26656827-26656895)
chr5 (165-233)||(26928414-26928482)
[»] chr8 (3 HSPs)
chr8 (101-239)||(10408937-10409076)
chr8 (135-223)||(5994757-5994846)
chr8 (173-235)||(6444151-6444214)
[»] chr6 (2 HSPs)
chr6 (101-239)||(21881579-21881718)
chr6 (92-235)||(20740694-20740837)
[»] chr7 (1 HSPs)
chr7 (99-237)||(3302689-3302828)


Alignment Details
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 92 - 236
Target Start/End: Original strand, 17281807 - 17281951
Alignment:
Q  92 gctgaggcgttggtgggttttgtggtgtatcgttgatgcttttcggtggttttttggttttcgtaggtctcagactatttgatttgttttctcgcttggt 191  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||    
T  17281807 gctgagacgttggtgggttttgtggtgtatcgttgatgctttccggtggttgtttgtttttcgtaggtctcagactatttgatttgttttctctcttggt 17281906  T
Q  192 agtggtggaggttatgtttgctcgcaacataggtggtgatggatc 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  17281907 agtggtggaggttatgtttgctcgcaacataggtggtgatggatc 17281951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 92 - 239
Target Start/End: Complemental strand, 1895670 - 1895522
Alignment:
Q  92 gctgaggcgttggtgggttttgtggtgtatcgttg-atgcttttcggtggttttttggttttcgtaggtctcagactatttgatttgttttctcgcttgg 190  Q
    |||||| ||||||||| ||||||||||| |||||| |||||| ||||||||| ||||||||| || |||||||||||||||||||| ||||||| |||||    
T  1895670 gctgagacgttggtggattttgtggtgtgtcgttggatgcttgtcggtggttgtttggtttttgtgggtctcagactatttgatttcttttctctcttgg 1895571  T
Q  191 tagtggtggaggttatgtttgctcgcaacataggtggtgatggatcggt 239  Q
    | |||||||||||||||| |||||||||||||||||||||| |||||||    
T  1895570 ttgtggtggaggttatgtctgctcgcaacataggtggtgattgatcggt 1895522  T

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Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 94 - 237
Target Start/End: Complemental strand, 17375535 - 17375391
Alignment:
Q  94 tgaggcgttggtgggttttgtggtgtatcgttg-atgcttttcggtggttttttggttttcgtaggtctcagactatttgatttgttttctcgcttggta 192  Q
    |||| ||||||||||||| ||||||| |||||| |||| | ||||||||| |||||||||||| | ||||| ||||||||||| ||||||||  |||||     
T  17375535 tgagacgttggtgggtttcgtggtgtgtcgttggatgcctgtcggtggttgtttggttttcgtggctctcacactatttgattcgttttctctattggtt 17375436  T
Q  193 gtggtggaggttatgtttgctcgcaacataggtggtgatggatcg 237  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  17375435 gtggtggaggttatgtttgctcacaacataggtggtgatggatcg 17375391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 92 - 236
Target Start/End: Original strand, 1551461 - 1551605
Alignment:
Q  92 gctgaggcgttggtgggttttgtggtgtatcgttg-atgcttttcggtggttttttggttttcgtaggtctcagactatttgatttgttttctcgcttgg 190  Q
    |||||| ||||||||||||||||||  | |||||| ||||||  | ||  || |||| ||||||| ||||||||||||||||||||||||||||  ||||    
T  1551461 gctgagacgttggtgggttttgtgga-tgtcgttggatgcttgcctgtaattgtttgattttcgtgggtctcagactatttgatttgttttctctattgg 1551559  T
Q  191 tagtggtggaggttatgtttgctcgcaacataggtggtgatggatc 236  Q
    | |||||||| |||||||||||||||||||||||||||||||||||    
T  1551560 ttgtggtggatgttatgtttgctcgcaacataggtggtgatggatc 1551605  T

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Target: chr2; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 92 - 172
Target Start/End: Complemental strand, 4140656 - 4140576
Alignment:
Q  92 gctgaggcgttggtgggttttgtggtgtatcgttgatgcttttcggtggttttttggttttcgtaggtctcagactatttg 172  Q
    |||||| ||||||||||||||||||||||||||||||||||  |||||||| |||||||||||| ||||||||||||||||    
T  4140656 gctgagacgttggtgggttttgtggtgtatcgttgatgcttgccggtggttctttggttttcgtgggtctcagactatttg 4140576  T

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Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 3921734 - 3921684
Alignment:
Q  186 cttggtagtggtggaggttatgtttgctcgcaacataggtggtgatggatc 236  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  3921734 cttggttgtggtggatgttatgtttgctcgcaacataggtggtgatggatc 3921684  T

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Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 99 - 233
Target Start/End: Complemental strand, 4869839 - 4869707
Alignment:
Q  99 cgttggtgggttttgtggtgtatcgttg-atgcttttcggtggttttttggttttcgtaggtctcagactatttgatttgttttctcgcttggtagtggt 197  Q
    |||||||| |||| |||||||  ||||| |||||| ||||||||| |||||||||    || ||   ||||||||||| |||||||| |||||| | |||    
T  4869839 cgttggtgcgtttcgtggtgtgacgttggatgcttctcggtggttgtttggttttaccggggct---actatttgattcgttttctctcttggttgcggt 4869743  T
Q  198 ggaggttatgtttgctcgcaacataggtggtgatgg 233  Q
    |||||||| ||||| | |||||||||||||||||||    
T  4869742 ggaggttacgtttgatagcaacataggtggtgatgg 4869707  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 239
Target Start/End: Original strand, 38531146 - 38531210
Alignment:
Q  176 tgttttctcgcttggtagtgg-tggaggttatgtttgctcgcaacataggtggtgatggatcggt 239  Q
    ||||||||  |||||| |||| |||||||| |||||| |||||||||| ||||||||||||||||    
T  38531146 tgttttctttcttggtggtggatggaggttttgtttgttcgcaacatatgtggtgatggatcggt 38531210  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 198
Target Start/End: Complemental strand, 34660449 - 34660352
Alignment:
Q  99 cgttggtgggttttgtggtgtatcgttg-atgcttttcggtggttttttggttttcgtaggtctcagactatttgatttgttttctcgcttggtagtggt 197  Q
    ||||||||||||| ||| ||| |||||| |||||| ||||||||| |||||||||  |||| ||   ||||||||||| |||||||| ||| || |||||    
T  34660449 cgttggtgggtttcgtgatgtgtcgttggatgcttgtcggtggttgtttggttttattagggct---actatttgattcgttttctctcttagttgtggt 34660353  T

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Target: chr4 (Bit Score: 97; Significance: 8e-48; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 92 - 239
Target Start/End: Complemental strand, 53202526 - 53202378
Alignment:
Q  92 gctgaggcgttggtgggttttgtggtgtatcgttg-atgcttttcggtggttttttggttttcgtaggtctcagactatttgatttgttttctcgcttgg 190  Q
    |||||| ||||||||||||||||||||| |||||| |||||| || |||||| |||||||||||| ||||||| |||||||||||||||||||| |||||    
T  53202526 gctgagacgttggtgggttttgtggtgtgtcgttggatgcttgtctgtggttgtttggttttcgtgggtctcaaactatttgatttgttttctctcttgg 53202427  T
Q  191 tagtggtggaggttatgtttgctcgcaacataggtggtgatggatcggt 239  Q
    | ||||||||||||||||||||||||||||||||||||||  |||||||    
T  53202426 ttgtggtggaggttatgtttgctcgcaacataggtggtgacagatcggt 53202378  T

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Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 92 - 236
Target Start/End: Original strand, 47518313 - 47518458
Alignment:
Q  92 gctgaggcgttggtgggttttgtggtgtatcgttg-atgcttttcggtggttttttggttttcgtaggtctcagactatttgatttgttttctcgcttgg 190  Q
    |||||| ||||||| | ||||||||||| |||||| |||||| ||||||||| |||||||||| | |||||||||||||||||||||||||||| ||  |    
T  47518313 gctgagacgttggtagattttgtggtgtgtcgttggatgcttgtcggtggttgtttggttttcatgggtctcagactatttgatttgttttctctctatg 47518412  T
Q  191 tagtggtggaggttatgtttgctcgcaacataggtggtgatggatc 236  Q
    | ||||||||||||||||||||||||||||||||||||||||||||    
T  47518413 ttgtggtggaggttatgtttgctcgcaacataggtggtgatggatc 47518458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 94 - 236
Target Start/End: Original strand, 23054098 - 23054241
Alignment:
Q  94 tgaggcgttggtgggttttgtggtgtatcgttg-atgcttttcggtggttttttggttttcgtaggtctcagactatttgatttgttttctcgcttggta 192  Q
    |||| |||||||||||||||||| || | | || |||||| || |||||| |||||||||||| ||||| |||||||||||||||||||||| ||||||     
T  23054098 tgagacgttggtgggttttgtggcgtgttgctggatgcttgtcagtggttgtttggttttcgtgggtctgagactatttgatttgttttctctcttggtt 23054197  T
Q  193 gtggtggaggttatgtttgctcgcaacataggtggtgatggatc 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  23054198 gtggtggaggttatgtttgctcgcaacataggtggtgatggatc 23054241  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 6410164 - 6410103
Alignment:
Q  179 tttctcgcttggtagtgg-tggaggttatgtttgctcgcaacataggtggtgatggatcggt 239  Q
    |||||| |||||| |||| |||||||||||||||||||||| ||||||||||||||||||||    
T  6410164 tttctctcttggtggtggatggaggttatgtttgctcgcaaaataggtggtgatggatcggt 6410103  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 24957572 - 24957616
Alignment:
Q  195 ggtggaggttatgtttgctcgcaacataggtggtgatggatcggt 239  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  24957572 ggtggaggttatgtttgctcgcaacataggtggtgatgtatcggt 24957616  T

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Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 100 - 236
Target Start/End: Complemental strand, 34655207 - 34655070
Alignment:
Q  100 gttggtgggttttgtggtgtatcgttg-atgcttttcggtggttttttggttttcgtaggtctcagactatttgatttgttttctcgcttggtagtggtg 198  Q
    |||||| ||||| ||||||| |||||| ||||||| ||||| || |||||||||||| ||||||||||||||||||||||||||||  ||||| ||||||    
T  34655207 gttggttggtttcgtggtgtgtcgttggatgctttccggtgtttgtttggttttcgtgggtctcagactatttgatttgttttctcttttggttgtggtg 34655108  T
Q  199 gaggttatgtttgctcgcaacataggtggtgatggatc 236  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34655107 gaggttatgtttgctcgcaacataggtggtgatggatc 34655070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 99 - 237
Target Start/End: Original strand, 39708890 - 39709029
Alignment:
Q  99 cgttggtgggtttt-gtggtgtatcgtt-gatgcttttcggtggttttttggttttcgtaggtctcagactatttgatttgttttctcgcttggtagtgg 196  Q
    |||||||||||||| ||||||| | ||| ||||||| ||||||||| |||||||||| | ||||||  ||||||||||| |||||||| |||||| ||||    
T  39708890 cgttggtgggtttttgtggtgtgttgttagatgcttgtcggtggttgtttggttttc-tgggtctcgaactatttgattcgttttctctcttggttgtgg 39708988  T
Q  197 tggaggttatgtttgctcgcaacataggtggtgatggatcg 237  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  39708989 tggaggttatgtttgctcgcaatataggtggtgatggatcg 39709029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 99 - 239
Target Start/End: Complemental strand, 34118227 - 34118084
Alignment:
Q  99 cgttggtgggttttgtggtgtatcgttg-atgcttttcggtggttttttggttttcgtaggtctcagactatttgatttgttttctcgcttggtagtg-- 195  Q
    |||||||||||||  |||||| |||||| ||||||  |||||||| ||| |||||||| | ||||||| ||||||||||||||||||  ||||| |||      
T  34118227 cgttggtgggtttcatggtgtgtcgttggatgcttgccggtggttgtttagttttcgtggatctcagattatttgatttgttttctctattggttgtgtg 34118128  T
Q  196 gtggaggttatgtttgctcgcaacataggtggtgatggatcggt 239  Q
    || |||||||||||||||||||||||||||||||||||||||||    
T  34118127 gtagaggttatgtttgctcgcaacataggtggtgatggatcggt 34118084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 99 - 233
Target Start/End: Complemental strand, 615955 - 615823
Alignment:
Q  99 cgttggtgggttttgtggtgtatcgttg-atgcttttcggtggttttttggttttcgtaggtctcagactatttgatttgttttctcgcttggtagtggt 197  Q
    ||||||||||||| ||||||| |||||| |||||| ||||||||| |||||||||  | |  ||   ||||||||||| |||||||| |||||| |||||    
T  615955 cgttggtgggtttcgtggtgtgtcgttggatgcttctcggtggttgtttggttttattggagct---actatttgattcgttttctctcttggttgtggt 615859  T
Q  198 ggaggttatgtttgctcgcaacataggtggtgatgg 233  Q
    |||| ||||||||| |||||||||||||||||||||    
T  615858 ggagattatgtttgatcgcaacataggtggtgatgg 615823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 11407928 - 11407994
Alignment:
Q  173 atttgttttctcgcttggtagtgg-tggaggttatgtttgctcgcaacataggtggtgatggatcgg 238  Q
    |||||||||||| |||||| |||| |||||||||||||||||||||||||| |||||||||||||||    
T  11407928 atttgttttctctcttggtggtgggtggaggttatgtttgctcgcaacataagtggtgatggatcgg 11407994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 236
Target Start/End: Original strand, 26236622 - 26236682
Alignment:
Q  177 gttttctcgcttggtagtgg-tggaggttatgtttgctcgcaacataggtggtgatggatc 236  Q
    |||||||| || ||| |||| |||||||||||||| |||| ||||||| ||||||||||||    
T  26236622 gttttctctctcggtggtggatggaggttatgtttactcgaaacatagatggtgatggatc 26236682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 104 - 238
Target Start/End: Original strand, 7766879 - 7767014
Alignment:
Q  104 gtgggttttgtggtgtatcgttg-atgcttttcggtggttttttggttttcgtaggtctcagactatttgatttgttttctcgcttggtagtggtggagg 202  Q
    |||||||| ||||||| |||||| ||||||  |||||||| |||||||||||| |||||||||||||||||||||||||||| |||||| ||| ||||||    
T  7766879 gtgggtttcgtggtgtgtcgttggatgcttgccggtggttgtttggttttcgtgggtctcagactatttgatttgttttctctcttggttgtgatggagg 7766978  T
Q  203 ttatgtttgctcgcaacataggtggtgatggatcgg 238  Q
    ||||||||||||||||||||||||||||| ||||||    
T  7766979 ttatgtttgctcgcaacataggtggtgattgatcgg 7767014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 92 - 236
Target Start/End: Original strand, 41355408 - 41355553
Alignment:
Q  92 gctgaggcgttggtgggttttgtggtgtatcgttg-atgcttttcggtggttttttggttttcgtaggtctcagactatttgatttgttttctcgcttgg 190  Q
    |||||| ||||||||||||||||||||| |||||| ||||||  |||||||| ||| |||| ||| | ||| || ||||||||||||||||||| |||||    
T  41355408 gctgagacgttggtgggttttgtggtgtgtcgttggatgcttgccggtggttgtttagtttccgtggatcttaggctatttgatttgttttctctcttgg 41355507  T
Q  191 tagtggtggaggttatgtttgctcgcaacataggtggtgatggatc 236  Q
    | |||||||||||||| ||||||||||||||||| |||||||||||    
T  41355508 ttgtggtggaggttatatttgctcgcaacataggcggtgatggatc 41355553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 99 - 239
Target Start/End: Original strand, 27169957 - 27170099
Alignment:
Q  99 cgttggtgggttttgtggtgtatcgttg-atgcttttcggtggttttttggttttcgtaggtctcagactatttgatttgtttt-ctcgcttggtagtgg 196  Q
    ||||||||||||| ||||||| | | || ||||||| || ||||| |||||||||||| |||||||| |||||||||| ||||| ||| |||||| ||||    
T  27169957 cgttggtgggtttcgtggtgtgttgctggatgctttccgatggttgtttggttttcgtgggtctcaggctatttgattcgtttttctctcttggttgtgg 27170056  T
Q  197 tggaggttatgtttgctcgcaacataggtggtgatggatcggt 239  Q
    ||||||||||||||||||||||| || ||||||||||||||||    
T  27170057 tggaggttatgtttgctcgcaacgtaagtggtgatggatcggt 27170099  T

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Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 106 - 236
Target Start/End: Complemental strand, 18697181 - 18697048
Alignment:
Q  106 gggttttgtggtgtatcgttg-atgcttttcggtggttttttggttttcgtaggtctcagactatttgatttgttttctcgcttggt--agtggtggagg 202  Q
    |||||| ||||||| |||||| ||  || ||||||||| |||||||||||| ||||||||||||||||||||||||| |   |||||   ||||||||||    
T  18697181 gggtttcgtggtgtgtcgttggataattgtcggtggttgtttggttttcgtgggtctcagactatttgatttgttttttatattggttgtgtggtggagg 18697082  T
Q  203 ttatgtttgctcgcaacataggtggtgatggatc 236  Q
    |||||||||| |||||||||||||||||||||||    
T  18697081 ttatgtttgcccgcaacataggtggtgatggatc 18697048  T

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Target: chr5; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 165 - 232
Target Start/End: Complemental strand, 7271960 - 7271893
Alignment:
Q  165 actatttgatttgttttctcgcttggtagtggtggaggttatgtttgctcgcaacataggtggtgatg 232  Q
    ||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  7271960 actatttgattcgttttctctcttggttgtggtggaggttatgtttgctcgcaacataggtggtgatg 7271893  T

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Target: chr5; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 99 - 233
Target Start/End: Original strand, 6030259 - 6030391
Alignment:
Q  99 cgttggtgggttttgtggtgtatcgttg-atgcttttcggtggttttttggttttcgtaggtctcagactatttgatttgttttctcgcttggtagtggt 197  Q
    ||||||||||||| ||||||| |||||| |||||| ||||||||| |||||||||  | |  ||   ||||||||||| |||||||| |||||| | |||    
T  6030259 cgttggtgggtttcgtggtgtgtcgttggatgcttctcggtggttgtttggttttattggaact---actatttgattcgttttctctcttggttgcggt 6030355  T
Q  198 ggaggttatgtttgctcgcaacataggtggtgatgg 233  Q
    ||| |||||||||| ||| |||||||||||||||||    
T  6030356 ggatgttatgtttgatcggaacataggtggtgatgg 6030391  T

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Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 233
Target Start/End: Complemental strand, 26656895 - 26656827
Alignment:
Q  165 actatttgatttgttttctcgcttggtagtggtggaggttatgtttgctcgcaacataggtggtgatgg 233  Q
    ||||||||||| |||||||| |||||| || ||| ||||||||||||||||||| ||| ||||||||||    
T  26656895 actatttgattcgttttctctcttggttgttgtgaaggttatgtttgctcgcaatataagtggtgatgg 26656827  T

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Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 233
Target Start/End: Complemental strand, 26928482 - 26928414
Alignment:
Q  165 actatttgatttgttttctcgcttggtagtggtggaggttatgtttgctcgcaacataggtggtgatgg 233  Q
    ||||||||||| |||||||| |||||| || ||| ||||||||||||||||||| ||| ||||||||||    
T  26928482 actatttgattcgttttctctcttggttgttgtgaaggttatgtttgctcgcaatataagtggtgatgg 26928414  T

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Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 101 - 239
Target Start/End: Complemental strand, 10409076 - 10408937
Alignment:
Q  101 ttggtgggttttgtggtgtatcgttg-atgcttttcggtggttttttggttttcgtaggtctcagactatttgatttgttttctcgcttggtagtggtgg 199  Q
    ||||||||||||||||||| |||||| |||||| | ||||||| ||||||||| || ||||||| |||||||||||| || |||| |||||| |||||||    
T  10409076 ttggtgggttttgtggtgtgtcgttggatgcttgttggtggttatttggtttttgtgggtctcaaactatttgattttttctctctcttggttgtggtgg 10408977  T
Q  200 aggttatgtttgctcgcaacataggtggtgatggatcggt 239  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  10408976 aggttatgtttgctcgcaacataggtggtgatggaacggt 10408937  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 135 - 223
Target Start/End: Complemental strand, 5994846 - 5994757
Alignment:
Q  135 cggtggttttttggttttcgtaggtctcagactatttgatttgttttctcgcttggtagtgg-tggaggttatgtttgctcgcaacatag 223  Q
    ||||| || |||||||||||| || |||| ||| |||||||||||||||| |||||| |||| |||| ||||||||||||||||||||||    
T  5994846 cggtgattgtttggttttcgtgggcctcaaactgtttgatttgttttctctcttggttgtggatggatgttatgtttgctcgcaacatag 5994757  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 6444214 - 6444151
Alignment:
Q  173 atttgttttctcgcttggtagtgg-tggaggttatgtttgctcgcaacataggtggtgatggat 235  Q
    ||||| |||||| |||||| |||| ||||||||||||||||||||||| |||||||| ||||||    
T  6444214 atttgatttctctcttggttgtggatggaggttatgtttgctcgcaacttaggtggttatggat 6444151  T

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Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 101 - 239
Target Start/End: Complemental strand, 21881718 - 21881579
Alignment:
Q  101 ttggtgggttttgtggtgtatcgttg-atgcttttcggtggttttttggttttcgtaggtctcagactatttgatttgttttctcgcttggtagtggtgg 199  Q
    ||||||| ||||||||||| |||||| |||||| ||||| ||| |||||||||||| | ||||||||||||||||| |||||||| |||||  |||| ||    
T  21881718 ttggtggattttgtggtgtgtcgttggatgcttgtcggtcgttgtttggttttcgtggctctcagactatttgattcgttttctctcttggctgtggcgg 21881619  T
Q  200 aggttatgtttgctcgcaacataggtggtgatggatcggt 239  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  21881618 aggttatgtttgctcgcaacaaaggtggtgatggatcggt 21881579  T

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Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 92 - 235
Target Start/End: Complemental strand, 20740837 - 20740694
Alignment:
Q  92 gctgaggcgttggtgggttttgtggtgtatcgttg-atgcttttcggtggttttttggttttcgtaggtctcagactatttgatttgttttctcgcttgg 190  Q
    |||||| |||||||||||||||||| || |||||| ||||||    ||  || |||||||||||| ||||||| |||||||||||||||||||| |||||    
T  20740837 gctgagacgttggtgggttttgtgg-gtgtcgttggatgcttgcatgttattgtttggttttcgtgggtctcaaactatttgatttgttttctctcttgg 20740739  T
Q  191 tagtggtggaggttatgtttgctcgcaacataggtggtgatggat 235  Q
    | |||||||| ||||||||||||||||||||||||||||||||||    
T  20740738 ttgtggtggatgttatgtttgctcgcaacataggtggtgatggat 20740694  T

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Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 99 - 237
Target Start/End: Complemental strand, 3302828 - 3302689
Alignment:
Q  99 cgttggtgggttttgtggtgtatcgttg-atgcttttcggtggttttttggttttcgtaggtctcagactatttgatttgttttctcgcttggtagtggt 197  Q
    ||||| ||||||| ||||||| || ||| ||||||   ||||||| |||||||||||| | |||||||||||||||||  ||| ||| |||||| |||||    
T  3302828 cgttgctgggtttcgtggtgtgtcattggatgcttagtggtggttgtttggttttcgtggatctcagactatttgattcatttcctctcttggttgtggt 3302729  T
Q  198 ggaggttatgtttgctcgcaacataggtggtgatggatcg 237  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  3302728 ggaggttatgtttgctcgcaacataggtggtgatagatcg 3302689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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