View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20020_low_29 (Length: 237)
Name: NF20020_low_29
Description: NF20020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20020_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 27792823 - 27793043
Alignment:
| Q |
1 |
caaatttaagggatgcgacataaaagtgtggatagacgtactcaataaaagtcgatatatcatagtagaagtgtattagtttcccttattaacaccgccc |
100 |
Q |
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| T |
27792823 |
caaatttaagggatgcgacataaaagtgtggatagacgtactcaataaaagtcgatatatcatagtagaagtgtattagtttcccttattaacaccgccc |
27792922 |
T |
|
| Q |
101 |
tttcctttgatgatggtgactggacactcagaatggtgggcacagtagttgctaacacttcccaggaacattctgcaaccaaaaattcaaagcattgtga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27792923 |
tttcctttgatgatggtgactggacactcagaatggtgggcacagtagttgctaacacttcccaggaacattctgcaaccaaaaattcaaagcattgtga |
27793022 |
T |
|
| Q |
201 |
gaggcgagtccatatagtttc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
27793023 |
gaggcgagtccatatagtttc |
27793043 |
T |
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