View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20020_low_3 (Length: 589)
Name: NF20020_low_3
Description: NF20020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20020_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-141; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 16 - 318
Target Start/End: Complemental strand, 31214115 - 31213814
Alignment:
| Q |
16 |
gattcttctgtaaagagaatgctggagatgaaagagaaagaattatggttgcagttgcagcagaaactttttgacgagnnnnnnnngtattttgagcttg |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31214115 |
gattcttctgtaaagagaatgctggagatgaaagagaaagaattatggttgcagttgcagcagaaactttttgacgagaaaaaaatgtattttgagcttg |
31214016 |
T |
|
| Q |
116 |
aaatggaacaaaagcggaaatccctcattaagaagtttaggaggcaggaggaagccttagagtataggaaagctgaagtcaaccttagggaaaccaagat |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
31214015 |
aaatggaacaaaagcggaaatccctcattaagaagtttaggagacaggaggaagccttagagtatagggaagctgaagtcaaccttagggaaaccaaggt |
31213916 |
T |
|
| Q |
216 |
tgttgaaaaagagcaagttgtgagtatgatctctgagagaataaaggttcaaaagcaaggcacttgtaaatatgttaaaatctttgaaggagatggaaat |
315 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31213915 |
tgttgaaaaagagcaagttgtgaggatgatctctgagagaataaaggttcaaaagcaaggcacttgt-aatatgttaaaatctttgaaggagatggaaat |
31213817 |
T |
|
| Q |
316 |
gac |
318 |
Q |
| |
|
||| |
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|
| T |
31213816 |
gac |
31213814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 16 - 318
Target Start/End: Complemental strand, 31219870 - 31219569
Alignment:
| Q |
16 |
gattcttctgtaaagagaatgctggagatgaaagagaaagaattatggttgcagttgcagcagaaactttttgacgagnnnnnnnngtattttgagcttg |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31219870 |
gattcttctgtaaagagaatgctggagatgaaagagaaagaattatggttgcagttgcagcagaaactttttgacgagaaaaaaatgtattttgagcttg |
31219771 |
T |
|
| Q |
116 |
aaatggaacaaaagcggaaatccctcattaagaagtttaggaggcaggaggaagccttagagtataggaaagctgaagtcaaccttagggaaaccaagat |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
31219770 |
aaatggaacaaaagcggaaatccctcattaagaagtttaggagacaggaggaagccttagagtatagggaagctgaagtcaaccttagggaaaccaaggt |
31219671 |
T |
|
| Q |
216 |
tgttgaaaaagagcaagttgtgagtatgatctctgagagaataaaggttcaaaagcaaggcacttgtaaatatgttaaaatctttgaaggagatggaaat |
315 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31219670 |
tgttgaaaaagagcaagttgtgaggatgatctctgagagaataaaggttcaaaagcaaggcacttgt-aatatgttaaaatctttgaaggagatggaaat |
31219572 |
T |
|
| Q |
316 |
gac |
318 |
Q |
| |
|
||| |
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|
| T |
31219571 |
gac |
31219569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 433 - 581
Target Start/End: Complemental strand, 31213686 - 31213538
Alignment:
| Q |
433 |
atgcttgctgatcgagaaagtttggagaattcaaatgttaacatttctagctcaaactattctgcaaggcctgtgtctcgactccacaattgcacgtcca |
532 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31213686 |
atgcttgctgatcgagaaagtttggagaattcaaatgttatcgtttctagctcaaactgttctgcaaggcctgtgtctcggctccacaattgcacgtcca |
31213587 |
T |
|
| Q |
533 |
agctttacagtttctctaaagaaataaattctgttggtacttcatatat |
581 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
31213586 |
agctttacagtttatctaaagaaacaaattctgttggtacttcatatat |
31213538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 433 - 581
Target Start/End: Complemental strand, 31219441 - 31219293
Alignment:
| Q |
433 |
atgcttgctgatcgagaaagtttggagaattcaaatgttaacatttctagctcaaactattctgcaaggcctgtgtctcgactccacaattgcacgtcca |
532 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31219441 |
atgcttgctgatcgagaaagtttggagaattcaaatgttatcgtttctagctcaaactgttctgcaaggcctgtgtctcggctccacaattgcacgtcca |
31219342 |
T |
|
| Q |
533 |
agctttacagtttctctaaagaaataaattctgttggtacttcatatat |
581 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
31219341 |
agctttacagtttatctaaagaaacaaattctgttggtacttcatatat |
31219293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 247 - 307
Target Start/End: Complemental strand, 31213800 - 31213741
Alignment:
| Q |
247 |
tctgagagaataaaggttcaaaagcaaggcacttgtaaatatgttaaaatctttgaaggag |
307 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||| ||||| || ||||||||||||||| |
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| T |
31213800 |
tctgagagaataaaggttcaaaa-taagggacttgaaaataatttgaaatctttgaaggag |
31213741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 247 - 307
Target Start/End: Complemental strand, 31219555 - 31219496
Alignment:
| Q |
247 |
tctgagagaataaaggttcaaaagcaaggcacttgtaaatatgttaaaatctttgaaggag |
307 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||| ||||| || ||||||||||||||| |
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| T |
31219555 |
tctgagagaataaaggttcaaaa-taagggacttgaaaataatttgaaatctttgaaggag |
31219496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 16 - 307
Target Start/End: Original strand, 47895431 - 47895723
Alignment:
| Q |
16 |
gattcttctgtaaagagaatgctggagatgaaagagaaagaattatggttgcagttgcagcagaaactttttgacgagnnnnnnnn-gtattttgagctt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
47895431 |
gattcttctgtaaagagaatgctggagatgaaagagaaagaattatggttgcagttgcagcagaaactttttgacgaggaaaaaaaagtattttgagctt |
47895530 |
T |
|
| Q |
115 |
gaaatggaacaaaagcggaaatccctcattaagaagtttaggaggcaggaggaagccttagagtataggaaagctgaagtcaaccttagggaaaccaaga |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47895531 |
gaaatggaacaaaagcggaaatccctcattaagaagtttaggagacaggaggaagccttagagtataggaaagctgaagtcaaccttagggaaaccaaga |
47895630 |
T |
|
| Q |
215 |
ttgttgaaaaagagcaagttgtgagtatgatctctgagagaataaaggttcaaaagcaaggcacttgtaaatatgttaaaatctttgaaggag |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47895631 |
ttgttgaaaaagagcaagttgtgagtatgatctctgagagaatgaaggttcaaaagcaaggcacttgtaaatatgttaaaatctttgaaggag |
47895723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 431 - 581
Target Start/End: Original strand, 47895775 - 47895925
Alignment:
| Q |
431 |
tcatgcttgctgatcgagaaagtttggagaattcaaatgttaacatttctagctcaaactattctgcaaggcctgtgtctcgactccacaattgcacgtc |
530 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
47895775 |
tcatgcttgctgatcgagaaagtttggagaattcaaatgttatcatttctagctcaaactgttctgcaaggcctgtgtctcggctccacaattgcacgtc |
47895874 |
T |
|
| Q |
531 |
caagctttacagtttctctaaagaaataaattctgttggtacttcatatat |
581 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47895875 |
caagctttacagtttctctaaagaaataaattctgttggtacttcatatat |
47895925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 106 - 262
Target Start/End: Complemental strand, 4960170 - 4960014
Alignment:
| Q |
106 |
tttgagcttgaaatggaacaaaagcggaaatccctcattaagaagtttaggaggcaggaggaagccttagagtataggaaagctgaagtcaaccttaggg |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | || ||||||| || ||||||||||||| ||||||||| || |||||||||| ||||| |
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|
| T |
4960170 |
tttgagcttgaaatggaacaaaagcggaaatccctagctgaggagtttagcagcaaggaggaagccttggagtatagggaaatcgaagtcaaccataggg |
4960071 |
T |
|
| Q |
206 |
aaaccaagattgttgaaaaagagcaagttgtgagtatgatctctgagagaataaagg |
262 |
Q |
| |
|
|||| ||| ||| || ||||||||| | |||||| || |||||||||||||||| |
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|
| T |
4960070 |
aaacgaaggttggaaaagaagagcaagctttgagtacgaagtctgagagaataaagg |
4960014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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