View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20020_low_30 (Length: 235)
Name: NF20020_low_30
Description: NF20020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20020_low_30 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 123851 - 124050
Alignment:
| Q |
18 |
aataatgagttgagaattaggtatctaataaggaagaagatagaccacctccgtgagttgcaagatgtcatgtagtggtagaacaacagcactaccaatg |
117 |
Q |
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| T |
123851 |
aataatgagttgagaattaggtatctaataaggaagaagatagaccacctccgtgagttgcaagatgtcatgtagtggtagaacaacagcactaccaatg |
123950 |
T |
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| Q |
118 |
aacctctcaatagatgagtattgtgttagagatgatgaagatgggctaaacacttgagattgaacacttagttgctgactttgtgacgatcctgcgtcat |
217 |
Q |
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| T |
123951 |
aacctctcaatagatgagtattgtgttagagatgatgaagatgggctaaacatttgagattgaacacttagttgctgactttgtgacgatcctgtgtcat |
124050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 85 - 204
Target Start/End: Original strand, 23697779 - 23697898
Alignment:
| Q |
85 |
tcatgtagtggtagaacaacagcactaccaatgaacctctcaatagatgagtattgtgttagagatgatgaagatgggctaaacacttgagattgaacac |
184 |
Q |
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|||| |||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||| |||||| ||||||||||||| |
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| T |
23697779 |
tcatttagtggtagaacaacaacactaccaatgaatctctcaatagatgagtattgcgttagagatgacgaagatgggataaacatctgagattgaacac |
23697878 |
T |
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| Q |
185 |
ttagttgctgactttgtgac |
204 |
Q |
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| T |
23697879 |
ttagttgctgactctgtgac |
23697898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 137
Target Start/End: Original strand, 22078709 - 22078755
Alignment:
| Q |
91 |
agtggtagaacaacagcactaccaatgaacctctcaatagatgagta |
137 |
Q |
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| T |
22078709 |
agtggtagaacaacagcactaccaatgaacctttcaatagatgagta |
22078755 |
T |
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