View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20020_low_5 (Length: 491)
Name: NF20020_low_5
Description: NF20020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20020_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 414; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 16 - 477
Target Start/End: Original strand, 45282305 - 45282766
Alignment:
| Q |
16 |
gagacaagacaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccaccaaagcagacatatctccta |
115 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
45282305 |
gagacaagacaattgcggtagtactgtctgttgctttgaacatacaagctgtcttggtaacccacgatatggcaacccaccaaagcagacatatctcctt |
45282404 |
T |
|
| Q |
116 |
cgtttctaaatgccacggcttggtgaccatcaggaccggctgtgttttcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcat |
215 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45282405 |
ggtttctaaatgccacagcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcat |
45282504 |
T |
|
| Q |
216 |
ggataatcaattaattagtaatttcaatcacattggctatatatgtcaatgttatatgtgtatctatatcttttcaatgttagttatgttttcttcaaaa |
315 |
Q |
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|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45282505 |
ggataatcaattaattagtaatttcgatcacattggctatatatgtcaatgttatatgtgtatctatatcttttcaatgttagttatgttttcttcaaaa |
45282604 |
T |
|
| Q |
316 |
atgaattttgagagtgatgccactttttctcatatactgtttcttcattcataagtacataattaattaaataaaataaaaatgttttgatcgatgataa |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
45282605 |
atgaattttgagagtgatgccactttttctcatatactctttcttcattcataagtaaataattaattaaataaaataaaaaagttttgatcgatgataa |
45282704 |
T |
|
| Q |
416 |
ttgaattacgtaccgaaagtggcggtttgcatggtcttgacaccagcagcaaagctctttct |
477 |
Q |
| |
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|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45282705 |
ttgaattaagtaccgaaggtggcggtttgcatggtcttgacaccagcagcaaagctctttct |
45282766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 14 - 477
Target Start/End: Original strand, 45274060 - 45274525
Alignment:
| Q |
14 |
cagagacaagacaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
45274060 |
cagagacaagacaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccacgatatggcaacccaccaaagcagacatatctcc |
45274159 |
T |
|
| Q |
114 |
tacgtttctaaatgccacggcttggtgaccatcaggaccggctgtgttttcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattc |
213 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
45274160 |
tacgtttctaaatgccacagcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccctattgcggtgttggctgcacgc |
45274259 |
T |
|
| Q |
214 |
atggataatcaattaattagtaatttcaatcacattggctatatatgtcaatgttatatgtgtatctatatcttttcaatgttagttatgttttcttcaa |
313 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||| | | ||||||||||| ||||||||||||||||| |
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|
| T |
45274260 |
atggataatcaattaattagtaatttcgatcacactggctatatatgtcaatgttatatgtatatatttctcttttcaatgcgagttatgttttcttcaa |
45274359 |
T |
|
| Q |
314 |
aaatgaattttgagagtgatgccactttttctcatatactgtttcttcattcataa-gtacataattaattaaataaaat-aaaaatgttttgatcgatg |
411 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||| ||||||| |||||||| |||||| ||| | ||||||| ||||||||| ||||| | |||||| ||| |
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| T |
45274360 |
aaataaattttgagagtgatgctactttttcttatatactctttcttcaatcataaggtatacaattaatcaaataaaataaaaaaagctttgatagata |
45274459 |
T |
|
| Q |
412 |
ataattgaattacgtaccgaaagtggcggtttgcatggtcttgacaccagcagcaaagctctttct |
477 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||| ||||||| |
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|
| T |
45274460 |
ataattgaattacgtaccgaaggtggcggtttgcatggtcttggtaccggcagcaaagttctttct |
45274525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 28 - 428
Target Start/End: Original strand, 45270547 - 45270943
Alignment:
| Q |
28 |
ttgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcctacgtttctaaatg |
127 |
Q |
| |
|
||||||||| | ||||||||| ||||||| ||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
45270547 |
ttgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacctacgatatggcaacccaccaaagcagacatatctcctatgtttctaaatg |
45270646 |
T |
|
| Q |
128 |
ccacggcttggtgaccatcaggaccggctgtgttttcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcatggataatcaatt |
227 |
Q |
| |
|
|||| ||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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|
| T |
45270647 |
ccacagcttgcataccggcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcatgcatggatgatcaatt |
45270746 |
T |
|
| Q |
228 |
aattagtaatttcaatcacattggctatatatgtcaatgttatatgtgtatctatatcttttcaatgttagtt-atgttttcttcaaaaatgaattttga |
326 |
Q |
| |
|
||||||||| ||| || ||| |||||||||| | ||| | | | ||| |||||||||||||||| |||| ||||||| |||||||||||||||||| |
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|
| T |
45270747 |
aattagtaacttctataacaccggctatatatatgtatg---tgtctatatatatatcttttcaatgtgagttaatgtttttttcaaaaatgaattttga |
45270843 |
T |
|
| Q |
327 |
gagtgatgccactttttctcatatactgtttcttcattcataa-gtacataattaattaaataaaataaaaatgttttgatcgatgataattgaattacg |
425 |
Q |
| |
|
||||||||| ||| |||| ||| |||| | ||||||||||||| ||||| ||||||||||||||||||||| | |||||||||| |||| ||||||||| |
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|
| T |
45270844 |
gagtgatgctactatttcacatctactctctcttcattcataaggtacacaattaattaaataaaataaaa--gctttgatcgat-ataactgaattacg |
45270940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 14 - 272
Target Start/End: Original strand, 45293643 - 45293904
Alignment:
| Q |
14 |
cagagacaagacaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcc |
113 |
Q |
| |
|
|||||| || ||||||||||||| | ||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45293643 |
cagagataacacaattgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcc |
45293742 |
T |
|
| Q |
114 |
tacgtttctaaatgccacggcttggtgaccatcaggaccggctgtgttttcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattc |
213 |
Q |
| |
|
| ||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| | |
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|
| T |
45293743 |
ttggtttctaaatgccacagcttggtgaccagcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccaatgcggtgttggctgcatgc |
45293842 |
T |
|
| Q |
214 |
atggataatcaattaattagtaatttcaatcacattggc---tatatatgtcaatgttatat |
272 |
Q |
| |
|
|||||| |||||||||||||||| ||| |||||| ||| ||||| |||||||||||||| |
|
|
| T |
45293843 |
atggatgatcaattaattagtaacttcgatcacaccggctattatatgtgtcaatgttatat |
45293904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 14 - 272
Target Start/End: Original strand, 45302603 - 45302864
Alignment:
| Q |
14 |
cagagacaagacaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcc |
113 |
Q |
| |
|
|||||| || ||||||||||||| | ||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45302603 |
cagagataacacaattgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcc |
45302702 |
T |
|
| Q |
114 |
tacgtttctaaatgccacggcttggtgaccatcaggaccggctgtgttttcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattc |
213 |
Q |
| |
|
| ||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| | |
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|
| T |
45302703 |
ttggtttctaaatgccacagcttggtgaccagcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccaatgcggtgttggctgcatgc |
45302802 |
T |
|
| Q |
214 |
atggataatcaattaattagtaatttcaatcacattggc---tatatatgtcaatgttatat |
272 |
Q |
| |
|
|||||| |||||||||||||||| ||| |||||| ||| ||||| |||||||||||||| |
|
|
| T |
45302803 |
atggatgatcaattaattagtaacttcgatcacaccggctattatatgtgtcaatgttatat |
45302864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 283 - 466
Target Start/End: Original strand, 45293957 - 45294143
Alignment:
| Q |
283 |
atcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtgatgccactttttctcata--tactgtttcttcattcataag-tacataatt |
379 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||| ||| |||||||||||||||| |||| |||| |
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|
| T |
45293957 |
atcttttcaatgtgagttatgttttcttcaaaaatgaattttgagagtgatgttactatttctcatcattaccctttcttcattcataaggtacacaatt |
45294056 |
T |
|
| Q |
380 |
aattaaataaaataaaaatgttttgatcgatgataattgaattacgtaccgaaagtggcggtttgcatggtcttgacaccagcagca |
466 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
45294057 |
tattaaataaaataaaaaagttgtgatcgatgataattgaattacttaccgaaggtggcggtttgcatggtcttgacaccagcagca |
45294143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 283 - 466
Target Start/End: Original strand, 45302917 - 45303103
Alignment:
| Q |
283 |
atcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtgatgccactttttctcata--tactgtttcttcattcataag-tacataatt |
379 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||| ||| |||||||||||||||| |||| |||| |
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|
| T |
45302917 |
atcttttcaatgtgagttatgttttcttcaaaaatgaattttgagagtgatgttactatttctcatcattaccctttcttcattcataaggtacacaatt |
45303016 |
T |
|
| Q |
380 |
aattaaataaaataaaaatgttttgatcgatgataattgaattacgtaccgaaagtggcggtttgcatggtcttgacaccagcagca |
466 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
45303017 |
tattaaataaaataaaaaagttgtgatcgatgataattgaattacttaccgaaggtggcggtttgcatggtcttgacaccagcagca |
45303103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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