View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20020_low_7 (Length: 413)
Name: NF20020_low_7
Description: NF20020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20020_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 140 - 398
Target Start/End: Original strand, 8172895 - 8173153
Alignment:
| Q |
140 |
ttctcattaatatttagtataaaacagaatgacaattacactgtgatataaaggattggtagctcacaaccttctaaccaacaagtgtaaaataccggta |
239 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8172895 |
ttctcattaatatttattataaaacagaatgacaattacactgtgatataaaggattggtagctcacaaccttctaaccaacaagtgtaaaataccggta |
8172994 |
T |
|
| Q |
240 |
aaatagaaataacgaacatagcagagaataaaatgcagctgcaattgctgccagccagcttctagaatcatggattgcaaataaagtcctccatccattt |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8172995 |
aaatagaaataacgaacatagcagagaataaaatgcagctgcaattgctgtcagccagcttctagaatcatggattgcaaataaagtcctccatccattt |
8173094 |
T |
|
| Q |
340 |
gagtttatgaatttgaatttgtctcttgccaaagctcatagtcatttcctcgctagcat |
398 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8173095 |
gggtttatgaatttgaatttgtctcttgccaaagctcatagtcatttcctcactagcat |
8173153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 8172770 - 8172853
Alignment:
| Q |
15 |
gagttttttaactttttgatcttatgatacacttagccagctaagtgatcgataaattgcactcttcgagtgagtgtagactcc |
98 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8172770 |
gagttttgtaactttttgatcttatgatacacctagccagctaagtgatcgataaattgcactcttcgagtgagtgtagactcc |
8172853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University