View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20020_low_8 (Length: 409)
Name: NF20020_low_8
Description: NF20020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20020_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 382
Target Start/End: Complemental strand, 34585757 - 34585393
Alignment:
| Q |
18 |
tgaagttgatgtcatcttgattcaagctggctcttgatactatgtgttgagagtaatgttaggttttgattgattggttttaaaactaggaatggtgaaa |
117 |
Q |
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| T |
34585757 |
tgaagttgatgtcatcttgattcaagctggctcttgatactatgtgttgagagtaatgttaggttttgattgattggttttaaaactaggaatggtgaaa |
34585658 |
T |
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| Q |
118 |
gttaagtgataataatgggcaggactgggctcatcatgagttatgagtcaatagtgcacaatgtcccacatcgctaagttggaaacaatctgtgaaacta |
217 |
Q |
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| T |
34585657 |
gttaagtgataataatgggcaggactgagctcatcatgagttatgagtcaatcgtgcaccatgtcccacatcgctaagttggaaacaatctgtgatacta |
34585558 |
T |
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| Q |
218 |
tgctttataaaacaggagctgaatgagatgttattaatgggccaagacagtaggccggtctttgtgaacatgtgtgccttcaatattgttttttatttgg |
317 |
Q |
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|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
34585557 |
tgctttataaaagaggagctgaatgagatgttattcatgggccaagacagtaggccggtctttgtgaacatgtgtgccttcaatattgttttttatttag |
34585458 |
T |
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| Q |
318 |
gtaggaaaaagaaattaaagtttgccccagtttcaaactttttgttaatttgtttctttttttgc |
382 |
Q |
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| T |
34585457 |
gtaggaaaaagaaattaaagttggcaccagtttcaaactttttgttaatttgtttctttttttgc |
34585393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 172 - 205
Target Start/End: Complemental strand, 34581921 - 34581888
Alignment:
| Q |
172 |
tgcacaatgtcccacatcgctaagttggaaacaa |
205 |
Q |
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| T |
34581921 |
tgcacaatgtcccacatcgctaagttggaaacaa |
34581888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 34582070 - 34582021
Alignment:
| Q |
18 |
tgaagttgatgtcatcttgattcaagctggctcttgatactatgtgttga |
67 |
Q |
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| T |
34582070 |
tgaacttgatgtcattgtgattcaacctggctgttgatactatgtgttga |
34582021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 195
Target Start/End: Original strand, 38168669 - 38168799
Alignment:
| Q |
65 |
tgagagtaatgttaggttttgattgattggttttaaaactaggaatggtgaaagttaagtgataataatgggcaggactgggctcatcatgagttatgag |
164 |
Q |
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| T |
38168669 |
tgagaataacgttaggctctgattgattggttttaaagctatgaatggtgaatgtttgatcataatagtggacgggtttggactcatcatgagttatcag |
38168768 |
T |
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| Q |
165 |
tcaatagtgcacaatgtcccacatcgctaag |
195 |
Q |
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| T |
38168769 |
ttaacgttgaaaaatgtcccacatcgctaag |
38168799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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