View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20020_low_9 (Length: 405)
Name: NF20020_low_9
Description: NF20020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20020_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 50275547 - 50275148
Alignment:
| Q |
1 |
gcaattgatggcgatcttcaatctgcagcattcttgtcaacaggctgaagatgcattatctcgaggcatggaagctttgcaacaatctctttcagagaca |
100 |
Q |
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| T |
50275547 |
gcaattgatggcgatcttcaatctgcagcattcttgtcaacaggctgaagatgcattatctcaaggaatggaaggtttgcaacaatctctttcagagaca |
50275448 |
T |
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| Q |
101 |
ctttcctccacgtccactggatctggaaatgttgctgagtatatgggtcaaatggctctttcaatggccaagctttccagactggagactttcattcatc |
200 |
Q |
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| T |
50275447 |
ctttcctccacgtccactggatctggaaatgttgttgagtatatgggtcaaatggctctttcaatggccaagctttccacactggagactttcattcatc |
50275348 |
T |
|
| Q |
201 |
aggtaattaattaagacaatgtaatcttgatcactcaacattatcttattccacatttaattgagagtgataacattttgagcattattgtttttcttag |
300 |
Q |
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| T |
50275347 |
aggtaattaattaagacaatgtaatcttgatcactcaacattatcttattccacatttaattgagagtgataacattttgagcattattgtttttcttag |
50275248 |
T |
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| Q |
301 |
gcggatatcttgaggcaacaaacactgcaacagatgcgtcgaattttgactgcgcaccaagctgctcgtgctctccttgtcataaatgatttcatctcac |
400 |
Q |
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| T |
50275247 |
gcagatatcttgaggcaacaaacactgcaacagatgcgtcgaattttgactgcgcaccaagctgctcgtgctctccttgtcataaatgatttcatttcac |
50275148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 50279571 - 50279172
Alignment:
| Q |
1 |
gcaattgatggcgatcttcaatctgcagcattcttgtcaacaggctgaagatgcattatctcgaggcatggaagctttgcaacaatctctttcagagaca |
100 |
Q |
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| T |
50279571 |
gcaattgatggcgatcttcaatctgcagcattcttgtcaacaggctgaagatgcattatctcaaggaatggaaggtttgcaacaatctctttcagagaca |
50279472 |
T |
|
| Q |
101 |
ctttcctccacgtccactggatctggaaatgttgctgagtatatgggtcaaatggctctttcaatggccaagctttccagactggagactttcattcatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
50279471 |
ctttcctccacgtccactggatctggaaatgttgttgagtatatgggtcaaatggctctttcaatggccaagctttccacactggagactttcattcatc |
50279372 |
T |
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| Q |
201 |
aggtaattaattaagacaatgtaatcttgatcactcaacattatcttattccacatttaattgagagtgataacattttgagcattattgtttttcttag |
300 |
Q |
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| T |
50279371 |
aggtaattaattaagacaatgtaatcttgatcactcaacattatcttattccacatttaattgagagtgataacattttgagcattattgtttttcttag |
50279272 |
T |
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| Q |
301 |
gcggatatcttgaggcaacaaacactgcaacagatgcgtcgaattttgactgcgcaccaagctgctcgtgctctccttgtcataaatgatttcatctcac |
400 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
50279271 |
gcagatatcttgaggcaacaaacactgcaacagatgcgtcgaattttgactgcgcaccaagctgctcgtgctctccttgtcataaatgatttcatttcac |
50279172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 108
Target Start/End: Original strand, 22610624 - 22610691
Alignment:
| Q |
41 |
caggctgaagatgcattatctcgaggcatggaagctttgcaacaatctctttcagagacactttcctc |
108 |
Q |
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|||||||| ||||| ||||||| ||||||||||| ||| |||||||||||| ||| ||||||||||| |
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| T |
22610624 |
caggctgaggatgctttatctcacggcatggaagcattgaaacaatctcttttagaaacactttcctc |
22610691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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