View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20021_high_10 (Length: 393)
Name: NF20021_high_10
Description: NF20021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20021_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 33904767 - 33904394
Alignment:
| Q |
1 |
ttggttgacgtgttcatgccaaagaagtgtaacaaagaaggaaaatcgttcaactttgcaagattcataggggtaatcgacacaaggaaactaaaagatc |
100 |
Q |
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||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33904767 |
ttggttgacgtgttcatgccaaagaagcgaaacaaggaaggaaaatcgttcaactttgcaagattcataggggtaatcgacacaaggaaactaaaagatc |
33904668 |
T |
|
| Q |
101 |
atctaaggagaaaatgatttggcatgtatgataaaagatgatttcaaaatcctcaacacaataatacgtatttccgcgtttatcaaaaataaattacaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33904667 |
atctaaggagaaaatgatttggcatgtatgataaaagatgatttcaaaatcctcaacacaataatacgtatttccgcgtttatcaaaaataaattacgaa |
33904568 |
T |
|
| Q |
201 |
accacataggccgcgcattagtttagactattctattagtttgacagaattctaaatcaaagtttagactttgttaactattcattcaatgattactatt |
300 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33904567 |
accacataggccgcacattagtttagactattctattagtttgaaagaattctaaatcaaagtttagactttgttaactattcattcaatgattactatt |
33904468 |
T |
|
| Q |
301 |
ggttgaatgtatattttctaagattatgatataacttcacgtatccctcattatatttaatacaaattggatga |
374 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
33904467 |
ggttgaatgtatattttctaagattatgatataacttcacgtatccctcattatagttgatacaaattggatga |
33904394 |
T |
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