View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20021_high_12 (Length: 365)
Name: NF20021_high_12
Description: NF20021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20021_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 20 - 351
Target Start/End: Original strand, 39130475 - 39130806
Alignment:
| Q |
20 |
tatacccccaacatatccaatattgggtagggagtgaaaccctacaaaattatgtgactatggcatggcctaatactacaatcttgatattgtgtctatt |
119 |
Q |
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| T |
39130475 |
tatacccccaacatatccaatattgggtagggagtgaaaccctacaaaattatgtgactatggcatggcctaatactacaatcttgatattgtgtctatt |
39130574 |
T |
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| Q |
120 |
aataagaaaaatattatgattttagatatccaattttatctcctctgatttcctaattgtctcctaatttcaaacaggtaagctctcaaagctttccctc |
219 |
Q |
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| T |
39130575 |
aataataaaaatattatgattttagatatccaattttatctcctctgatttcctaattgtctcctaatttcaaacaggtaagctctcaaagctttccctc |
39130674 |
T |
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| Q |
220 |
ttaaacacaggtaatatcattttgcttgatgccggtcaaaacaacatttggtcttcaaacacagaatcaaacactccactagagttgtatctaaaagaag |
319 |
Q |
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| T |
39130675 |
ttaaacacaggtaatatccttttgcttgatgccggtcaaaacaacatttggtcttcaaacacagaatcaaacactccactagagttgtatctaaaagaag |
39130774 |
T |
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| Q |
320 |
atggcaatcttgtgttacgtgagcttcaaggt |
351 |
Q |
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| T |
39130775 |
atggcaatcttgtgttacgtgagcttcaaggt |
39130806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 64 - 134
Target Start/End: Original strand, 39120723 - 39120793
Alignment:
| Q |
64 |
caaaattatgtgactatggcatggcctaatactacaatcttgatattgtgtctattaataagaaaaatatt |
134 |
Q |
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| T |
39120723 |
caaaattatgtgactatggtatggcctaatactacaatcttgatattgtgtctattaataataaaaatatt |
39120793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 5e-47; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 187 - 350
Target Start/End: Complemental strand, 18660256 - 18660093
Alignment:
| Q |
187 |
tttcaaacaggtaagctctcaaagctttccctcttaaacacaggtaatatcattttgcttgatgccggtcaaaacaacatttggtcttcaaacacagaat |
286 |
Q |
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|||| ||||||||||| ||||||||||| |||||||||||||||||| ||| | ||||||||||| |||||| |||||| ||||||||||||||||| || |
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| T |
18660256 |
tttccaacaggtaagcactcaaagcttttcctcttaaacacaggtaacatcctcttgcttgatgcgggtcaacacaacacttggtcttcaaacacagcat |
18660157 |
T |
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| Q |
287 |
caaacactccactagagttgtatctaaaagaagatggcaatcttgtgttacgtgagcttcaagg |
350 |
Q |
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| T |
18660156 |
caaatgcttcattagagttgtatctcaaagaagatggtaatcttgtattacgtgagcttcaagg |
18660093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 92 - 350
Target Start/End: Complemental strand, 21132190 - 21131931
Alignment:
| Q |
92 |
atactacaatcttgatattgtgtctattaataagaaaaatattatgattttagatatccaatttt-atctcctctgatttcctaattgtctcctaatttc |
190 |
Q |
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| T |
21132190 |
atactccaatctagatattgtgtctatcaataataaatatactatcattctagctatctaatttttatctcctctaatttcttcgtctcgttataaattc |
21132091 |
T |
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| Q |
191 |
aaacaggtaagctctcaaagctttccctcttaaacacaggtaatatcattttgcttgatgccggtcaaaacaacatttggtcttcaaacacagaatcaaa |
290 |
Q |
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| T |
21132090 |
taacaggtaagctctcaaagcttttcctcttaaacaatggtaacatcctcttgcttgatgcgggtcaacactacacttggtcttcaaacacggcatcaga |
21131991 |
T |
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| Q |
291 |
cactccactagagttgtatctaaaagaagatggcaatcttgtgttacgtgagcttcaagg |
350 |
Q |
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| T |
21131990 |
tgctccgttagagttgtatctcaaagaagatggtaatcttgtgttacgtgagcttcaagg |
21131931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 204 - 350
Target Start/End: Complemental strand, 21113117 - 21112971
Alignment:
| Q |
204 |
ctcaaagctttccctcttaaacacaggtaatatcattttgcttgatgccggtcaaaacaacatttggtcttcaaacacagaatcaaacactccactagag |
303 |
Q |
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||||||||||| |||||||||||||||||| ||||| ||||| ||||| |||||| | |||| ||||||||||||||| | |||| | ||||| ||||| |
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| T |
21113117 |
ctcaaagcttttcctcttaaacacaggtaacatcatcttgctcgatgcgggtcaacataacacttggtcttcaaacacggcatcagatgctccattagag |
21113018 |
T |
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| Q |
304 |
ttgtatctaaaagaagatggcaatcttgtgttacgtgagcttcaagg |
350 |
Q |
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| T |
21113017 |
ttgtatcttagagaagatgggaatcttgtgttacgtgagcttcaagg |
21112971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 276 - 348
Target Start/End: Complemental strand, 21124442 - 21124370
Alignment:
| Q |
276 |
aaacacagaatcaaacactccactagagttgtatctaaaagaagatggcaatcttgtgttacgtgagcttcaa |
348 |
Q |
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| T |
21124442 |
aaacacagcatcagatgctccattagagttgtatctcaaagaagatggtaatcttgtgttacgtgagcttcaa |
21124370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 269 - 350
Target Start/End: Original strand, 21106819 - 21106900
Alignment:
| Q |
269 |
ggtcttcaaacacagaatcaaacactccactagagttgtatctaaaagaagatggcaatcttgtgttacgtgagcttcaagg |
350 |
Q |
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| T |
21106819 |
ggtcttcaaacacagcatcattgaaaccactagagttgcatctcaaagatgatggaaatcttgtgttgcgtgagcttcaagg |
21106900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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