View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20021_high_2 (Length: 706)

Name: NF20021_high_2
Description: NF20021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20021_high_2
NF20021_high_2
[»] chr2 (1 HSPs)
chr2 (1-687)||(37661987-37662673)


Alignment Details
Target: chr2 (Bit Score: 651; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 651; E-Value: 0
Query Start/End: Original strand, 1 - 687
Target Start/End: Complemental strand, 37662673 - 37661987
Alignment:
Q  1 agcagaaccataaccaaaacttgatgaatctttcagaatcccttcaagaacagaatgcaatgcagttgaaaatgaagaatacccttttgaaccaagtaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37662673 agcagaaccataaccaaaacttgatgaatctttcagaatcccttcgagaacagaatgcaatgcagttgaaaatgaagaatacccttttgaaccaagtaac 37662574  T
Q  101 tgaacaaccttgttccattcaacaaagttcttgaaatcaccaacttcatatgttgaatttgtcttgaatgaaggacaagttggtgaacgaatgaaatcag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  37662573 tgaacaaccttgttccattcaacaaagttcttgaaatcaccaacttcatatgttgaattggttttgaatgaaggacaagttggtgaacgaatgaaatcag 37662474  T
Q  201 aaccaccttgtaaaacttcacgttgcaaagaagaaaaaggtccaagaacaccatgaatgttgaattcttcaccaagaaacatatcagggtttgatatcaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37662473 aaccaccttgtaaaacttcacgttgcaaagaagaaaaaggtccaagaacaccatgaatgttgaattcttcaccaagaaacatatcagggtttgatatcaa 37662374  T
Q  301 aacatggttgatctcaactgttttttgcaaagtatcaaccttagtgagtgatgcattcttttggcgaaaaagggttgtttcgcaagttccttgtgacttg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37662373 aacatggttgatctcaactgttttttgcaaagtatcaaccttagtgagtgatgcattcttttggcgaaaaagggttgtttcgcaagttccttgtgacttg 37662274  T
Q  401 tttaagagttgttgcatggtgagtttggtagtgaaagtgtgatacattagaagacttttgaggaaccaaagagggagtgaggtgtttttgatagcagaat 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37662273 tttaagagttgttgcatggtgagtttggtagtgaaagtgtgatacattagaagacttttgaggaaccaaagagggagtgaggtgtttttgatagcagaat 37662174  T
Q  501 ctttgatggcaaagaaagttgagtttttaggtggaagaaagaatggtggtgaacgatgaagaagatcagccataagaacaaaaccttgttttttgagtgc 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37662173 ctttgatggcaaagaaagttgagtttttaggtggaagaaagaatggtggtgaacgatgaagaagatcagccataagaacaaaaccttgttttttgagtgc 37662074  T
Q  601 ttctgttgcgtttgttgagagtgtgtgagtttgtggagggatttcttgaggggaggatttggaatttgagtgtattgctgaagtgat 687  Q
    |||||||||||||||||||||||||||||||||||  |||||| ||| ||| ||||||||||||||||||||||||||||| |||||    
T  37662073 ttctgttgcgtttgttgagagtgtgtgagtttgtgatgggattacttcaggcgaggatttggaatttgagtgtattgctgaggtgat 37661987  T

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