View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20021_high_5 (Length: 564)
Name: NF20021_high_5
Description: NF20021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20021_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 18 - 559
Target Start/End: Complemental strand, 41159685 - 41159140
Alignment:
| Q |
18 |
acacctagctcttgcaacaatacatggcagtttacttcaagttctagtcttaagaaacaaaagcatcaatgtttttgattaaatggagttacaaatgttg |
117 |
Q |
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| T |
41159685 |
acacctagctcttgcaacaatgcatggcagtttacttcaagttctagtcttaagaaacaaaagcatcaatgtttttgattaaatggagttacaaatgttg |
41159586 |
T |
|
| Q |
118 |
cactgacacttcaattgaagatgtttctgtgttgtgtatgacacgacattgacannnnnnnnngttt-----gataagctttgacannnnnnnaatgata |
212 |
Q |
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| T |
41159585 |
cactgacacttcaattgaagatgtttctgtgttgtgtctgacacgacattgacacgtttttttttttttgttgataagctttgacatttttttaatgata |
41159486 |
T |
|
| Q |
213 |
catgttttagtatgttaaatgttatgttaattttatctttttcaagacttgaaccctaaatttttaactccccaactcctttaattgcttagttcaaacc |
312 |
Q |
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| T |
41159485 |
catgttttagtatgttaaatgttatgttaattttatctttttcaagacttgaaccctaaatttttaactccccaactcctttaattgcttagttcaaacc |
41159386 |
T |
|
| Q |
313 |
agttgaactaccaaannnnnnntataagctaacattgacacgggtgattacattcaattagttacattctttcgaacatgtccgactattcatgtttgta |
412 |
Q |
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| T |
41159385 |
agttgaactaccaaacccccc-tataagctaacattgacacggatgattacattcaattagttaaaaattttcgaacatgtccgactattcatgtttgta |
41159287 |
T |
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| Q |
413 |
tcaatgtcgtgtccaatatccgtatttgcttaagagattcctagattacaatcatcggtgtaaacggcattaaaacctttttggttcactttttgctgag |
512 |
Q |
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| T |
41159286 |
tcaatgtcgtgtccaatatccgtatttgcttaagagattcctagattacaatcataagtgtaaacggcattaaaacctttttggttcactttttgctgag |
41159187 |
T |
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| Q |
513 |
aaaaattatagttgttgaatattttaattttggtattgatgatgtcc |
559 |
Q |
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| T |
41159186 |
aaaaattatagttgttgaatattttaattttggtattggtgatgtcc |
41159140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 310
Target Start/End: Complemental strand, 23765874 - 23765822
Alignment:
| Q |
258 |
gacttgaaccctaaatttttaactccccaactcctttaattgcttagttcaaa |
310 |
Q |
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| T |
23765874 |
gacttgaaccataaaattttaactcctcaactcctttaatctcttagttcaaa |
23765822 |
T |
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