View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20021_high_7 (Length: 445)
Name: NF20021_high_7
Description: NF20021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20021_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 59 - 432
Target Start/End: Original strand, 44222409 - 44222787
Alignment:
| Q |
59 |
aataggagtgggtagaatatggaacaagttttatcatatgttttttgcattcctataaacaataagaaaattgggacacagaa------------cacaa |
146 |
Q |
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| T |
44222409 |
aataggagtgggtagaatatgggacaagttttatcaaatgttttttgcattcctataaacaataagaaaattgggacacagaaaaattataactacacaa |
44222508 |
T |
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| Q |
147 |
gttaaatataaaaagcactaaacaaacatggaaatgaggtggaagtgctgaagcagatcccaatttcttcctagctatatctgttgagttgtgaagtacg |
246 |
Q |
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| T |
44222509 |
gttaaatataaaaagcactaaacaaacatggaaatgaggtggaagtgatgaagcagatcccaatttcttcctagctatatctgttgagttgtgaagtacg |
44222608 |
T |
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| Q |
247 |
ttaaacttaaacccttttgtagaaagcgacattggtacggtacaactggcttcatcatcaactgtgttgcagtgagtctgcttatattgcttgcacaaaa |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
44222609 |
ttaaacttaaacccttttgtagaaagcgacattggtacagtacaactggcttcatcatcaactgtgttgcagtgagtctgct--tatttcttgcacaaaa |
44222706 |
T |
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| Q |
347 |
caggaaaatgaaagagacaacggataaaataaaacatatctccaatatagaagaaggagcagttacagtgagatcatttgtcagaa |
432 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44222707 |
caggaaaatgaaagagacaacgg-----ataaaacatatctccaatatagaagaaggagcagttacagtgagatcatttgtcagaa |
44222787 |
T |
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