View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20021_low_1 (Length: 863)
Name: NF20021_low_1
Description: NF20021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20021_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 579; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 193 - 847
Target Start/End: Complemental strand, 50605307 - 50604658
Alignment:
| Q |
193 |
tggtggatgaatcaaatgcttatcatccttaacttgtctaccatccgccacttcaaacaagccagtgacaagtagaatattgcacaggatgaaagcaacc |
292 |
Q |
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| T |
50605307 |
tggtggatgaatcaaatgcttatcatccttaacttgtctaccatccgccacttcaaacaagccagtgacaagtagaatattgcacaggatgaaagcaacc |
50605208 |
T |
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| Q |
293 |
acaacgccattagaaaaaactctcattgttagcgaacttaatgaatgtgtagtattgaaggaaggagtagtgaggttatattatatagtgaaggatgaaa |
392 |
Q |
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| T |
50605207 |
acaacgccattagaaaaaactctcattgttagtgaacttaatgaatgtgtagtattgaaggaaggagtagtgaggttatattatatagtgaaggatgaaa |
50605108 |
T |
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| Q |
393 |
ggttgatttcaaatttcaatatttctcaactgccacatttgaaagaggagtaaatgaataataaatatttccaactgtcctcttctct-----tctcctc |
487 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
50605107 |
ggttgatttcaaatttcaatatttctcaactgccacatttgaaagaggagtaaatgaataataaatatttccaactgtcctcttctcttctcttctcctc |
50605008 |
T |
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| Q |
488 |
tcaaacacgctcactgctgaatgctgatctctaaaaataaactcatgcatgtttttctttgtgatacggtaacatggtttttgaccacttggttactgct |
587 |
Q |
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| T |
50605007 |
tcaaacacgctcactgctgaatgctgatctctaaaaataaactcatgcatgtttttctttgtgatacggtaacatggtttt-----------ttactgct |
50604919 |
T |
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| Q |
588 |
ttttctttttcaccttattggccattacctatttcaatctcgttgatctgcaca-ggggtcttacactctagtaagctgcttctgtcgtatttattaatg |
686 |
Q |
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| T |
50604918 |
ttttcttttacaccttattggccattacctatttcaatctcgttgatctgcacagggggtcttacactctagtaagctgcttctgtcgtatttattaatg |
50604819 |
T |
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| Q |
687 |
tcttccactgataagcattaatgtctctaccaaccaatgttctctaactgaactctactattctattggtgctactgctagtattccgttctatgggatc |
786 |
Q |
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| T |
50604818 |
tcttccactgataagcattaatgtctctaccaaccaatgttctctaactgaactctactattctattggtgctactgctagtattccgttctatgggatc |
50604719 |
T |
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| Q |
787 |
aaggctaacagagtgtttcaatatcgattgatacttgtgaaaatgatatgtatatcaattt |
847 |
Q |
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| T |
50604718 |
aaggctaacagagtgtttcaatatagattgatacttgtgaaaatgacatgtatatcaattt |
50604658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 50605514 - 50605473
Alignment:
| Q |
1 |
gcccccaccaatcccatgtccaagccctccaccagcaccaag |
42 |
Q |
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| T |
50605514 |
gcccccaccaatcccatgtccaagccctccaccagcaccaag |
50605473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 167 - 204
Target Start/End: Complemental strand, 50605348 - 50605311
Alignment:
| Q |
167 |
tgtttgaatccgtgacctaacaaatgtggtggatgaat |
204 |
Q |
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| T |
50605348 |
tgtttgaatccgtgacctaacaaatgtggtggatgaat |
50605311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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