View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20021_low_10 (Length: 430)
Name: NF20021_low_10
Description: NF20021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20021_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 29 - 413
Target Start/End: Complemental strand, 33193851 - 33193458
Alignment:
| Q |
29 |
ttagagagtgctttcataacacccactagaca-------ctagaaagcatatatgaattctgaaaactcaccctcaaccattacaataatgacttgaaga |
121 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33193851 |
ttagagagtgctttcataacacccactagacagtagacactagaaagcatatatgaattctgaaaactcaccctcaaccattacaataatgacttgaaga |
33193752 |
T |
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| Q |
122 |
gcannnnnnnn-cactactagtagtatcaaagagtatagc------atatagaaatagcaaaggaaatgtgggttgctccaataccacctactaaatgac |
214 |
Q |
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||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33193751 |
gcatttttttttcactactagtagtatcaaagagtatagctatagcatataaaaatagcaaaggaaatgtgggttgctccaataccacctactaaatgac |
33193652 |
T |
|
| Q |
215 |
tatatatatgcaaaaataaattggttttgttgaataacgtgaatccaacgcgattcccatataagtaccactaattaatcacatcacaacacaacacaac |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33193651 |
tatatatatgcaaaaataaattggttttgttgaataacgtgaatccaacgcgattcccatataagtaccactaattaatcacatcacaacac-----aac |
33193557 |
T |
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| Q |
315 |
attaaacattgtcgtgacatgtttttaggtatgttatccaaaagtgtaattgcatgcatatgatatgacacagctactactagtactaagcttagatct |
413 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33193556 |
attaaacatggtcgtgacatgtttttaggtatgttatccaaaagtgtaattgcatgcatatgatatgacacagctactactagtactaagcttagatct |
33193458 |
T |
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