View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20021_low_16 (Length: 313)
Name: NF20021_low_16
Description: NF20021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20021_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 13 - 297
Target Start/End: Complemental strand, 36275731 - 36275447
Alignment:
| Q |
13 |
gcacagacaagactgatgaagtagaacaaaacggtgaagaagaaacaaccggagcaggagaacccggatccgaattggaaacattatcttgctgttgaag |
112 |
Q |
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| T |
36275731 |
gcacagacaagactgatgaagtagaacaaaacggtgaagaagaaacaaccggagcaggagaacccggatccgaattcgaaacattatcttgctgttgaag |
36275632 |
T |
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| Q |
113 |
aagatgtcgttgttgttctttaggtcgtgattcgggtagttcagagttattatccaacccgaatagataatcgggtacttcagaaaccatagaagaagct |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
36275631 |
aagatgtcgttgttgttctttaggtcgtgattcgggtagttcagagttattatccaaaccgaatagataatcgggtacttcagaaaccatagaagaagct |
36275532 |
T |
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| Q |
213 |
tctgatcttcctcgttctaaacccgaaacgccaccgtttaaagcatccatgaaccagttttctcttttagatgaaccgtttaaga |
297 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36275531 |
tctgatcttcctcgttctaaaccagaaacgccaccgtttaaagcatccatgaaccagttttctcttttagatgaaccgtttaaga |
36275447 |
T |
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