View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20021_low_19 (Length: 251)
Name: NF20021_low_19
Description: NF20021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20021_low_19 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 46158920 - 46159155
Alignment:
| Q |
1 |
ataatcaaaagcaagattgaacaatctcaaaagccacaaaataactctcccgagttgaaaggagacattttgtcaaggtttctagaattgaatgagacag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46158920 |
ataatcaaaagcaagattgaacaatctcaaaagccacaaaaaaactctcccgagttgaaaggagacattttgtcaaggtttctagaattgaatgagacag |
46159019 |
T |
|
| Q |
101 |
attcaaagtaccttaaagacgtaattttgagttttatcattgcaggaaaagatacaacatcaatcactctttcctgatttatttaccaactctgcaagca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46159020 |
attcaaagtaccttaaagacgtaattttgagttttatcattgcaggaaaagatacaacatcgatcactctttcctgatttatttaccaactctgcaagca |
46159119 |
T |
|
| Q |
201 |
tcctcatgttcaggaaaaaattgctcaagagattag |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
46159120 |
tcctcatgttcaggaaaaaattgctcaagagattag |
46159155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 2 - 235
Target Start/End: Original strand, 46165998 - 46166231
Alignment:
| Q |
2 |
taatcaaaagcaagattgaacaatctcaaaagccacaaaataactctcccgagttgaaaggagacattttgtcaaggtttctagaattgaatgagacaga |
101 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46165998 |
taatcagaagcaagattgagcaatctcaaaagccacagaataactcttctgagttgaaaggagacattttgtcaaggtttctagaattgaatgagacaga |
46166097 |
T |
|
| Q |
102 |
ttcaaagtaccttaaagacgtaattttgagttttatcattgcaggaaaagatacaacatcaatcactctttcctgatttatttaccaactctgcaagcat |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| ||||||||| |
|
|
| T |
46166098 |
ttcaaagtaccttaaagacgtaattttgagttttatcattgcaggaaaagatacaacagcaatcactctttcctggtttctttaccaactttgcaagcat |
46166197 |
T |
|
| Q |
202 |
cctcatgttcaggaaaaaattgctcaagagatta |
235 |
Q |
| |
|
||||||||||||||||||||||| || ||||||| |
|
|
| T |
46166198 |
cctcatgttcaggaaaaaattgcacaggagatta |
46166231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University