View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20021_low_22 (Length: 226)
Name: NF20021_low_22
Description: NF20021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20021_low_22 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 48680321 - 48680095
Alignment:
| Q |
1 |
gtgaaagtgatatttctaataaagtatgtcttagattcattcatgtatttctctaataaagagccatgcaatataagacggaatattgagagcaagtaga |
100 |
Q |
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| T |
48680321 |
gtgaaagtgatatttctaataaagtatgtcttagattcattcatgtatttct--aataaagagccatgcaatataagacggaatattgagagcaagtaga |
48680224 |
T |
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| Q |
101 |
aaatagagacatttgaagctacgtattgtaattcatgtatgattcatttgcttattgacctaactagtggc---atgtagtattaggaaaggaaaaataa |
197 |
Q |
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| T |
48680223 |
aaatagagacattcgaagctacgtattgtaattcatgtatgtttcatttgcttattgaccaaactagtggcatgatgtagtattaagaaaggaaaaatga |
48680124 |
T |
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| Q |
198 |
cttagctagttcatgcatgttactggaaa |
226 |
Q |
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| T |
48680123 |
cttagctagttcatgcatgttactggaaa |
48680095 |
T |
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