View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20021_low_23 (Length: 221)
Name: NF20021_low_23
Description: NF20021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20021_low_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 39369447 - 39369638
Alignment:
| Q |
17 |
aatattgactaatgaagaattatcaatatgtgataaggtgagtatgggaaagataatagaacaatgtaagagaattgagaaacctctaactt----taca |
112 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39369447 |
aatattgactgatgaagaattatcaatatgtgataaggtgagtatgggaaagataatagaacaatgtaagagaattgagaaacctctaactttacataca |
39369546 |
T |
|
| Q |
113 |
gatggggattgttgccttgacttttatcctaaatttgtcaaatttttatgtagtgtgttgaagaaacttatgacataaggataaccatgaatg |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39369547 |
gatggggattgttgccttgacttttatcctaaa-ttgtcaaatttttatgtagtgtgttgaagaaacttatgacataaggataaccatgaatg |
39369638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University