View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20021_low_24 (Length: 219)

Name: NF20021_low_24
Description: NF20021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20021_low_24
NF20021_low_24
[»] chr5 (3 HSPs)
chr5 (16-204)||(14105916-14106104)
chr5 (85-118)||(33911773-33911806)
chr5 (30-74)||(23294337-23294381)
[»] chr2 (2 HSPs)
chr2 (89-140)||(28314675-28314726)
chr2 (85-140)||(34557337-34557392)
[»] chr6 (2 HSPs)
chr6 (100-149)||(26219210-26219259)
chr6 (100-138)||(11442745-11442783)
[»] chr8 (1 HSPs)
chr8 (61-140)||(33435411-33435489)
[»] chr3 (1 HSPs)
chr3 (89-140)||(25258080-25258131)
[»] chr1 (1 HSPs)
chr1 (89-147)||(12027140-12027198)
[»] chr4 (2 HSPs)
chr4 (89-138)||(5961801-5961850)
chr4 (84-116)||(37397986-37398018)


Alignment Details
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 14106104 - 14105916
Alignment:
Q  16 tatcattattaccattctctcttatgaaattgttcattcactacatcaacggcagttaattgcctttgaacatttttaagatcagttcaatcacttttta 115  Q
    ||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||    
T  14106104 tatcattattacccttctttcttatgaaattgctcattcactacatcaacggcagttaattgccgctgaacatttttaagatcggttcaatcacttttta 14106005  T
Q  116 aattggtttgatcgatcttaaaagtatccaacaagagctaactgctgctgaaaatgtcgagcaatttcataaatgaaaatagtactttt 204  Q
    | ||||||||| ||||||||||||| |||||||| |||||||||| |||||||||| |||||||||||||||||||||| |||||||||    
T  14106004 agttggtttgaccgatcttaaaagtgtccaacaacagctaactgcggctgaaaatgccgagcaatttcataaatgaaaagagtactttt 14105916  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 118
Target Start/End: Original strand, 33911773 - 33911806
Alignment:
Q  85 acatttttaagatcagttcaatcactttttaaat 118  Q
    ||||||||||||| ||||||||||||||||||||    
T  33911773 acatttttaagattagttcaatcactttttaaat 33911806  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 23294381 - 23294337
Alignment:
Q  30 ttctctcttatgaaattgttcattcactacatcaacggcagttaa 74  Q
    ||||| ||||| |||||| |||||||||||||||||| |||||||    
T  23294381 ttctcacttataaaattgatcattcactacatcaacgacagttaa 23294337  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 140
Target Start/End: Complemental strand, 28314726 - 28314675
Alignment:
Q  89 ttttaagatcagttcaatcactttttaaattggtttgatcgatcttaaaagt 140  Q
    |||||||||| ||||||||||||||||||||||||  | |||||||||||||    
T  28314726 ttttaagatcggttcaatcactttttaaattggttgaaccgatcttaaaagt 28314675  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 140
Target Start/End: Complemental strand, 34557392 - 34557337
Alignment:
Q  85 acatttttaagatcagttcaatcactttttaaattggtttgatcgatcttaaaagt 140  Q
    |||||||||||||| ||||||||| ||||||||| ||||  |||||||||||||||    
T  34557392 acatttttaagatctgttcaatcattttttaaatcggttcaatcgatcttaaaagt 34557337  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 149
Target Start/End: Original strand, 26219210 - 26219259
Alignment:
Q  100 gttcaatcactttttaaattggtttgatcgatcttaaaagtatccaacaa 149  Q
    |||||||||| |||||||| ||||| ||||||||||||||| ||||||||    
T  26219210 gttcaatcacattttaaatcggtttaatcgatcttaaaagtctccaacaa 26219259  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 138
Target Start/End: Original strand, 11442745 - 11442783
Alignment:
Q  100 gttcaatcactttttaaattggtttgatcgatcttaaaa 138  Q
    ||||||||| ||||||||||||||| |||||||||||||    
T  11442745 gttcaatcattttttaaattggtttaatcgatcttaaaa 11442783  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 140
Target Start/End: Complemental strand, 33435489 - 33435411
Alignment:
Q  61 tcaacggcagttaattgcctttgaacatttttaagatcagttcaatcactttttaaattggtttgatcgatcttaaaagt 140  Q
    ||||||||||||||||| | |||  ||||||||||||||||| ||| ||||||||| | ||||  | |||||||||||||    
T  33435489 tcaacggcagttaattgtcgttgg-catttttaagatcagtttaattactttttaagtcggttcaaccgatcttaaaagt 33435411  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 140
Target Start/End: Complemental strand, 25258131 - 25258080
Alignment:
Q  89 ttttaagatcagttcaatcactttttaaattggtttgatcgatcttaaaagt 140  Q
    |||||||||||||||||||||||||||| | ||||  | |||||||||||||    
T  25258131 ttttaagatcagttcaatcactttttaagtcggttcaaccgatcttaaaagt 25258080  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 147
Target Start/End: Original strand, 12027140 - 12027198
Alignment:
Q  89 ttttaagatcagttcaatcactttttaaattggtttgatcgatcttaaaagtatccaac 147  Q
    |||||||||| | |||||||||||||||||||||| ||  |||||||||| | ||||||    
T  12027140 ttttaagatcggctcaatcactttttaaattggttcgactgatcttaaaaatgtccaac 12027198  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 5961801 - 5961850
Alignment:
Q  89 ttttaagatcagttcaatcactttttaaattggtttgatcgatcttaaaa 138  Q
    |||||||||||||||||||||||||||| |||| |  | |||||||||||    
T  5961801 ttttaagatcagttcaatcactttttaagttggctcaaccgatcttaaaa 5961850  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 37398018 - 37397986
Alignment:
Q  84 aacatttttaagatcagttcaatcactttttaa 116  Q
    ||||||||||||||| |||||||||||||||||    
T  37398018 aacatttttaagatcggttcaatcactttttaa 37397986  T

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