View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20021_low_4 (Length: 679)
Name: NF20021_low_4
Description: NF20021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20021_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 36 - 663
Target Start/End: Original strand, 41534553 - 41535185
Alignment:
| Q |
36 |
tttattttgatgtgtctttatatcaattatatgggatgggataggaaacatgatttctctcnnnnnnnn---------attatgtacatggtttgtatat |
126 |
Q |
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| T |
41534553 |
tttattttgatgtgtctttatatca-ttatatgggatgggataggaaacatgatttctctctttttatttttatttttattatgtacatggtttgtatat |
41534651 |
T |
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| Q |
127 |
a--agatgagctcttgtacttagatttcgttgc---------catggtttttaaatgtcaatgttgttgtccttggtttttcgtccatgttttgatattt |
215 |
Q |
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| T |
41534652 |
ataagataagctcttgtacttagatttcgttgcataatttgccatggtttttaaatgtcaatgttgttgtccttggtttttcgtccatgttttgatattt |
41534751 |
T |
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| Q |
216 |
gggaatttcaccaccaccatcact-----------acaaaaatttgtacgtttgaatcaaatatatttatagtaatttgattttgatggatggatgcata |
304 |
Q |
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| T |
41534752 |
gggaatttcaccaccaccatcactttagtgtacttagaagaatttgtacgtttgaatcaaatatatttatagtaatttgattttgatggatggatgcata |
41534851 |
T |
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| Q |
305 |
tgtgggtgattattgaagcatggaatggaacgatggcgttgtgttggcataaaagccataaactcaccgagttcttttctgaacaacttaaaagnnnnnn |
404 |
Q |
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| T |
41534852 |
tgtgggtgattattgaaacatggaatggaacgatggcgttgtgttggcataaaagccataaactcaccgagttcttttctgaacaacttaaaagtttttt |
41534951 |
T |
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| Q |
405 |
nnatgtatttaatttaatctgaagacaaaacatgatccccttccaattccaaattcatgagtccgtgactcgttgatcttggatatacctatagaaaatt |
504 |
Q |
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| T |
41534952 |
ttatgtatttaatttaatctgaagacaaaacatgatccccttccaattccaaattcatgagtccgtgactcattgatcttgg------------------ |
41535033 |
T |
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| Q |
505 |
gaggaaaattattttgattgtagagnnnnnnngaggttgacttttgtctatttttcattgcctagccatatacagcaattaagcaagcaaatttgttggt |
604 |
Q |
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| T |
41535034 |
----aaaattattttgattgtagagaaaaaaagaggttgacttttgtctatttttcattgcctagccatatacagcaattaagcaagcaaatttgttggt |
41535129 |
T |
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| Q |
605 |
gcgctgcgcatggtgtctaatttattatgattgagttaaatttaaataaaaagcactgt |
663 |
Q |
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| T |
41535130 |
gcgctgcgcatggtgtctaat---ttatgattgagttaaatttaaataaaaagcactgt |
41535185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 238
Target Start/End: Original strand, 41542754 - 41542898
Alignment:
| Q |
105 |
attatgtacatggtttgt--atataagatgagctcttgtacttagatttcgttgcc---------atggtttttaaatgtcaatgttgttgtccttggtt |
193 |
Q |
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| T |
41542754 |
attatgtacatggtttgtctatatactataagcttttgtacttagatttcgttgcataatttgctatggttttgaaatgacgatgctgctgtccttggtt |
41542853 |
T |
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| Q |
194 |
tttcgtccatgttttgatatttgggaatttcaccaccaccatcac |
238 |
Q |
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| T |
41542854 |
ttccgtccatgttttgatatttgggagtttagctaccaccatcac |
41542898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 276 - 330
Target Start/End: Original strand, 41543013 - 41543067
Alignment:
| Q |
276 |
gtaatttgattttgatggatggatgcatatgtgggtgattattgaagcatggaat |
330 |
Q |
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| T |
41543013 |
gtaatttgattttgatggatggatgcatttgtgagtgatttttgaaacatggaat |
41543067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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