View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20021_low_5 (Length: 618)

Name: NF20021_low_5
Description: NF20021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20021_low_5
NF20021_low_5
[»] chr4 (8 HSPs)
chr4 (16-604)||(51673189-51673778)
chr4 (269-335)||(21945479-21945545)
chr4 (292-337)||(5654606-5654651)
chr4 (301-342)||(8457933-8457974)
chr4 (280-337)||(20743293-20743350)
chr4 (292-337)||(31243563-31243608)
chr4 (301-337)||(10546156-10546192)
chr4 (301-337)||(18513256-18513292)
[»] chr8 (2 HSPs)
chr8 (301-337)||(40063959-40063995)
chr8 (301-344)||(29198487-29198530)
[»] chr7 (4 HSPs)
chr7 (301-341)||(44172901-44172941)
chr7 (301-337)||(4909159-4909195)
chr7 (294-346)||(36314633-36314685)
chr7 (301-337)||(38134421-38134457)
[»] chr6 (6 HSPs)
chr6 (292-335)||(9195771-9195814)
chr6 (304-341)||(10157995-10158032)
chr6 (301-337)||(12235534-12235570)
chr6 (301-341)||(29711270-29711310)
chr6 (301-337)||(30781309-30781345)
chr6 (301-337)||(34446573-34446609)
[»] chr3 (4 HSPs)
chr3 (301-356)||(20691327-20691382)
chr3 (301-341)||(9210836-9210876)
chr3 (301-337)||(21149075-21149111)
chr3 (301-341)||(34409353-34409393)
[»] chr1 (3 HSPs)
chr1 (256-335)||(6427313-6427392)
chr1 (301-337)||(3921675-3921711)
chr1 (293-337)||(30847735-30847779)
[»] chr5 (3 HSPs)
chr5 (313-341)||(10010574-10010602)
chr5 (301-337)||(11596470-11596506)
chr5 (301-337)||(31264446-31264482)
[»] chr2 (4 HSPs)
chr2 (301-337)||(2846924-2846960)
chr2 (301-341)||(10254035-10254075)
chr2 (301-337)||(10535774-10535810)
chr2 (301-337)||(18570980-18571016)


Alignment Details
Target: chr4 (Bit Score: 542; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 16 - 604
Target Start/End: Complemental strand, 51673778 - 51673189
Alignment:
Q  16 gtttggattctacactactgattgtgcctggtactcctcaagggagtatggatgataatattagggtttttgtgattgatgctcttaagagaggcttttt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  51673778 gtttggattctacactactgattgtgcctggtactcctcaagggagtatggatgataatattagggtttttgtgattgatgctcttaagagagggttttt 51673679  T
Q  116 ccctgttgttatgaatcctagaggatgtgcctcctcacccatcaccactcctaggtattactattacttttcattcgctttctatatttttgaaattatt 215  Q
    ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  51673678 ccccgttgttatgaatcctagaggatgtgcctcctcacctatcaccactcctaggtattactattacttttcattctctttctatatttttgaaattatt 51673579  T
Q  216 tagctgttattaattttaggatatagtgttcagaaagtagctatgaagcacgaacatggcacatacactggcaagccgacactcctaataattggagaaa 315  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||    
T  51673578 tagcttttattaattttaggatatagtgttcagaaagtagctatgaagcacgaacacggcacatacactggcaagccgacactgataataattggagaaa 51673479  T
Q  316 atgacataattcattgtaatcacatgcgttgctgtcagacaatgacacacgtgagatacccgacacgcattcaatcaaaagtgt-ccgtgttacagaaca 414  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  51673478 atgacataattcattgtaatcacatgcgttgttgtcagacaatgacacatgtgagatacccgacacgcattcaatcaaaagtgtcccgtgttacagaaca 51673379  T
Q  415 tagtatttgtagtcaattttcctgctgattggtattggtatgctatagtgtatcaatgtgatcatgtatctattcgaaatgctagttcttttgggaatct 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51673378 tagtatttgtagtcaattttcctgctgattggtattggtatgctatagtgtatcaatgtgatcatgtatctattcgaaatgctagttcttttgggaatct 51673279  T
Q  515 gtgtagtggaaaacgaagttactgatagtatcttgtttgacactgtatagtaaatttagttcgtagttgtagtttagtagttttggtgtg 604  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51673278 gtgtagtggaaaacgaagttactgatagtatcttgtttgacactgtatagtaaatttagttcgtagttgtagtttagtagttttggtgtg 51673189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 269 - 335
Target Start/End: Original strand, 21945479 - 21945545
Alignment:
Q  269 acatggcacatacactggcaagccgacactcctaataattggagaaaatgacataattcattgtaat 335  Q
    ||||| |||| |||||| || ||||||||  ||||||||| || |||||||||||||||| ||||||    
T  21945479 acatgacacagacactgacatgccgacacagctaataatttgaaaaaatgacataattcagtgtaat 21945545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 337
Target Start/End: Complemental strand, 5654651 - 5654606
Alignment:
Q  292 cgacactcctaataattggagaaaatgacataattcattgtaatca 337  Q
    |||||||  |||||||| ||||||||||||||||||| ||||||||    
T  5654651 cgacactgataataatttgagaaaatgacataattcaatgtaatca 5654606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 342
Target Start/End: Original strand, 8457933 - 8457974
Alignment:
Q  301 taataattggagaaaatgacataattcattgtaatcacatgc 342  Q
    |||||||| ||||||||||||||||| | |||||||||||||    
T  8457933 taataatttgagaaaatgacataattgaatgtaatcacatgc 8457974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 337
Target Start/End: Complemental strand, 20743350 - 20743293
Alignment:
Q  280 acactggcaagccgacactcctaataattggagaaaatgacataattcattgtaatca 337  Q
    |||||| || ||||||||   |||||||| ||||||||||||||||||| ||||||||    
T  20743350 acactgacacgccgacacggataataatttgagaaaatgacataattcagtgtaatca 20743293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 337
Target Start/End: Complemental strand, 31243608 - 31243563
Alignment:
Q  292 cgacactcctaataattggagaaaatgacataattcattgtaatca 337  Q
    |||||||  |||||||| ||||||||||||||||||| ||||||||    
T  31243608 cgacacttataataatttgagaaaatgacataattcagtgtaatca 31243563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 301 - 337
Target Start/End: Original strand, 10546156 - 10546192
Alignment:
Q  301 taataattggagaaaatgacataattcattgtaatca 337  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  10546156 taataatttgagaaaatgacataattcaatgtaatca 10546192  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 301 - 337
Target Start/End: Complemental strand, 18513292 - 18513256
Alignment:
Q  301 taataattggagaaaatgacataattcattgtaatca 337  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  18513292 taataatttgagaaaatgacataattcaatgtaatca 18513256  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 301 - 337
Target Start/End: Original strand, 40063959 - 40063995
Alignment:
Q  301 taataattggagaaaatgacataattcattgtaatca 337  Q
    |||||||| ||||||||||||||||||||||||||||    
T  40063959 taataatttgagaaaatgacataattcattgtaatca 40063995  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 344
Target Start/End: Complemental strand, 29198530 - 29198487
Alignment:
Q  301 taataattggagaaaatgacataattcattgtaatcacatgcgt 344  Q
    |||||||| ||||||||||||||||||| |||||||| ||||||    
T  29198530 taataatttgagaaaatgacataattcaatgtaatcatatgcgt 29198487  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 44172941 - 44172901
Alignment:
Q  301 taataattggagaaaatgacataattcattgtaatcacatg 341  Q
    |||||||| ||||||||||||||||||| ||||||||||||    
T  44172941 taataatttgagaaaatgacataattcaatgtaatcacatg 44172901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 301 - 337
Target Start/End: Original strand, 4909159 - 4909195
Alignment:
Q  301 taataattggagaaaatgacataattcattgtaatca 337  Q
    |||||||| |||||||| |||||||||||||||||||    
T  4909159 taataatttgagaaaattacataattcattgtaatca 4909195  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 294 - 346
Target Start/End: Complemental strand, 36314685 - 36314633
Alignment:
Q  294 acactcctaataattggagaaaatgacataattcattgtaatcacatgcgttg 346  Q
    |||||| |||||||| |||||||||||||| |||| |||||||| ||| ||||    
T  36314685 acactcataataatttgagaaaatgacatatttcaatgtaatcatatgtgttg 36314633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 301 - 337
Target Start/End: Complemental strand, 38134457 - 38134421
Alignment:
Q  301 taataattggagaaaatgacataattcattgtaatca 337  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  38134457 taataatttgagaaaatgacataattcaatgtaatca 38134421  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 335
Target Start/End: Complemental strand, 9195814 - 9195771
Alignment:
Q  292 cgacactcctaataattggagaaaatgacataattcattgtaat 335  Q
    ||||||||||||||||| ||||||||||||||||| | ||||||    
T  9195814 cgacactcctaataatttgagaaaatgacataatttagtgtaat 9195771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 341
Target Start/End: Original strand, 10157995 - 10158032
Alignment:
Q  304 taattggagaaaatgacataattcattgtaatcacatg 341  Q
    ||||| ||||||||||||||||||| ||||||||||||    
T  10157995 taatttgagaaaatgacataattcaatgtaatcacatg 10158032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 301 - 337
Target Start/End: Complemental strand, 12235570 - 12235534
Alignment:
Q  301 taataattggagaaaatgacataattcattgtaatca 337  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  12235570 taataattagagaaaatgacataattcagtgtaatca 12235534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 29711270 - 29711310
Alignment:
Q  301 taataattggagaaaatgacataattcattgtaatcacatg 341  Q
    |||||||| ||||||||||||||||||||| ||| ||||||    
T  29711270 taataatttgagaaaatgacataattcattataaccacatg 29711310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 301 - 337
Target Start/End: Complemental strand, 30781345 - 30781309
Alignment:
Q  301 taataattggagaaaatgacataattcattgtaatca 337  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  30781345 taataatttgagaaaatgacataattaattgtaatca 30781309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 301 - 337
Target Start/End: Original strand, 34446573 - 34446609
Alignment:
Q  301 taataattggagaaaatgacataattcattgtaatca 337  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  34446573 taataatttgagaaaatgacataattcagtgtaatca 34446609  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 356
Target Start/End: Original strand, 20691327 - 20691382
Alignment:
Q  301 taataattggagaaaatgacataattcattgtaatcacatgcgttgctgtcagaca 356  Q
    |||||||| ||||||||||||||||||| |||||||| ||| || | |||||||||    
T  20691327 taataatttgagaaaatgacataattcagtgtaatcatatgtgtcggtgtcagaca 20691382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 9210876 - 9210836
Alignment:
Q  301 taataattggagaaaatgacataattcattgtaatcacatg 341  Q
    |||||||| ||||||||||||||||||| || |||||||||    
T  9210876 taataatttgagaaaatgacataattcaatggaatcacatg 9210836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 301 - 337
Target Start/End: Original strand, 21149075 - 21149111
Alignment:
Q  301 taataattggagaaaatgacataattcattgtaatca 337  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  21149075 taataatttgagaaaatgacataattcagtgtaatca 21149111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 34409393 - 34409353
Alignment:
Q  301 taataattggagaaaatgacataattcattgtaatcacatg 341  Q
    ||||| || ||||||||||||||||||| ||||||||||||    
T  34409393 taatacttcgagaaaatgacataattcaatgtaatcacatg 34409353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 335
Target Start/End: Original strand, 6427313 - 6427392
Alignment:
Q  256 ctatgaagcacgaacatggcacatacactggcaagccgacactcctaataattggagaaaatgacataattcattgtaat 335  Q
    |||||||||||| ||| |||||  |||||| || ||| ||||  ||||||||| |||||||| |||||||||| ||||||    
T  6427313 ctatgaagcacggacacggcacggacactgacacgccaacaccgctaataatttgagaaaatcacataattcaatgtaat 6427392  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 301 - 337
Target Start/End: Original strand, 3921675 - 3921711
Alignment:
Q  301 taataattggagaaaatgacataattcattgtaatca 337  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  3921675 taataatttgagaaaatgacataattcaatgtaatca 3921711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 293 - 337
Target Start/End: Complemental strand, 30847779 - 30847735
Alignment:
Q  293 gacactcctaataattggagaaaatgacataattcattgtaatca 337  Q
    |||||| ||||||||| || |||||||||||||||| ||||||||    
T  30847779 gacactgctaataatttgaaaaaatgacataattcaatgtaatca 30847735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 313 - 341
Target Start/End: Original strand, 10010574 - 10010602
Alignment:
Q  313 aaaatgacataattcattgtaatcacatg 341  Q
    |||||||||||||||||||||||||||||    
T  10010574 aaaatgacataattcattgtaatcacatg 10010602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 301 - 337
Target Start/End: Complemental strand, 11596506 - 11596470
Alignment:
Q  301 taataattggagaaaatgacataattcattgtaatca 337  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  11596506 taataatttgagaaaatgacataattcaatgtaatca 11596470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 301 - 337
Target Start/End: Original strand, 31264446 - 31264482
Alignment:
Q  301 taataattggagaaaatgacataattcattgtaatca 337  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  31264446 taataatttgagaaaatgacataattcagtgtaatca 31264482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 301 - 337
Target Start/End: Complemental strand, 2846960 - 2846924
Alignment:
Q  301 taataattggagaaaatgacataattcattgtaatca 337  Q
    ||||||||||||| |||||||||||||| ||||||||    
T  2846960 taataattggagacaatgacataattcaatgtaatca 2846924  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 10254035 - 10254075
Alignment:
Q  301 taataattggagaaaatgacataattcattgtaatcacatg 341  Q
    ||||||||| |||||||||||||||||| ||||||| ||||    
T  10254035 taataattgtagaaaatgacataattcaatgtaatcgcatg 10254075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 301 - 337
Target Start/End: Complemental strand, 10535810 - 10535774
Alignment:
Q  301 taataattggagaaaatgacataattcattgtaatca 337  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  10535810 taataatttgagaaaatgacataattcagtgtaatca 10535774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 301 - 337
Target Start/End: Original strand, 18570980 - 18571016
Alignment:
Q  301 taataattggagaaaatgacataattcattgtaatca 337  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  18570980 taataatttgagaaaatgacataattcaatgtaatca 18571016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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