View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20021_low_7 (Length: 562)
Name: NF20021_low_7
Description: NF20021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20021_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 18 - 553
Target Start/End: Original strand, 39938465 - 39938996
Alignment:
| Q |
18 |
cttcaatactgccaattatttcggacataatgtgacctttatcattgacacttactgacttacattattcaaagcagttcaaaccaattgtatatgtatc |
117 |
Q |
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| T |
39938465 |
cttcaatactgccaattatttcagacataatgtgacctttatcattgtcacttactgacttacattattcaaagcagttcaaaccaattgtatatgtatc |
39938564 |
T |
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| Q |
118 |
tttcttttcgaaccagttgtatttccattagattttagttgttgtgaccggtgccaccaattttgagaccaattgataaatactgcttatttatcacaaa |
217 |
Q |
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| T |
39938565 |
tttcttttcgaaccagttgtatttccattagattttagttgttgtgcccggtgccaccaattttgagaccaattgataaatactgcttat----cacaaa |
39938660 |
T |
|
| Q |
218 |
cagaattttgagaaagaatatccttttaccaagctgcatttgtacgggcttaannnnnnnnattaacagttatggaattggcttctaaattaataagaga |
317 |
Q |
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| T |
39938661 |
cagaattttgagaaagaatatccttttaccaagctgcatttgtacgggcttaattttttttattaacagttatggaattggcttctaaattaataagaga |
39938760 |
T |
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| Q |
318 |
ttgcacttggtctacattcctgcaaatatactactaatatagcttcgtaggaatatcgaaatatcggacttggatcctttgccgcttactctcttaagaa |
417 |
Q |
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| T |
39938761 |
ttgcacttggtctacattcctgcaaagatactactaatatagcttcgtaggaatatcgaaatatcggacttggatcctttgccgcttactctcttaagaa |
39938860 |
T |
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| Q |
418 |
tgtaaagaaggaatgaagaggggatttacaatgaaaatgaagaaggaatgcaaggatattgactatgtgtttctttaatttcaaggatattgactattta |
517 |
Q |
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| T |
39938861 |
tgtaaagaaggaatgaagaggggatttacaatgaaaatgaagaaggaatgcaaggatattgactatgtgtttctttaatttcaaggatattgactattta |
39938960 |
T |
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| Q |
518 |
caaagaaaaacatataatctccttaacgagtattat |
553 |
Q |
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| T |
39938961 |
caaagaaaaacatataatctctttaacgagtgttat |
39938996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 270
Target Start/End: Complemental strand, 43660644 - 43660554
Alignment:
| Q |
175 |
caattttgagaccaattgataaatactgcttatttatcacaaacagaattttgagaaagaatatccttttaccaagctgcatttgtacgggcttaa |
270 |
Q |
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| T |
43660644 |
caattttgacaccaattgattaatactgcttat----cacaataagaatgta-agaaagaatatactttaaccaagttgcatttgtacgggcttaa |
43660554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 422 - 462
Target Start/End: Original strand, 240502 - 240542
Alignment:
| Q |
422 |
aagaaggaatgaagaggggatttacaatgaaaatgaagaag |
462 |
Q |
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| T |
240502 |
aagaaggaatgaacagaggatttacaatgaaaatgcagaag |
240542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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